Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K20
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...   110   1e-24
AL034393-13|CAA22317.1|  340|Caenorhabditis elegans Hypothetical...    31   1.0  
Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z22181-14|CAI46590.1|  516|Caenorhabditis elegans Hypothetical p...    29   3.2  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    29   3.2  
AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication l...    29   3.2  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical...    29   4.2  
Z81050-12|CAN86586.1|  420|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z81050-11|CAN86585.1|  399|Caenorhabditis elegans Hypothetical p...    28   5.6  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score =  110 bits (264), Expect = 1e-24
 Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
 Frame = -3

Query: 614 RTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYK 435
           +T +GQ LD  + N+    SSFT DR                P+ + L++++ +    + 
Sbjct: 162 KTLIGQFLDTSSVNQ---ISSFTWDRYELMVENKTSHYTVFHPIQMALIISDVL--AYHG 216

Query: 434 SAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQR--- 264
           S + +  +IG +FQ QDDF+D +GD   TGK+GTDIQ+ KCTWLAV+ALQ+  +      
Sbjct: 217 SVKKVAYQIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLAVRALQKMHKTPEKWG 276

Query: 263 ----TVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIP 114
                 FK  +GS +P  VE+IKR+Y++L L Q ++  EK     I + I  IP
Sbjct: 277 AKLIEEFKTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEIP 330


>AL034393-13|CAA22317.1|  340|Caenorhabditis elegans Hypothetical
           protein Y18D10A.17 protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 221 VERIKRL-YEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLEMTXKRQHEAX 45
           V+ +++L  ED   P++ + ++ A YD      +NI  E+      K      K++ E  
Sbjct: 204 VDNLEKLNIEDKAEPEVEEKKDAAFYDKKTSFFDNISCESLEKAEGKTGRPDWKKERETN 263

Query: 44  REEMRHNAL 18
           +E   HNA+
Sbjct: 264 QETFGHNAV 272


>Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 388 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 242
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528


>Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 388 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 242
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528


>Z22181-14|CAI46590.1|  516|Caenorhabditis elegans Hypothetical
           protein ZK632.1b protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 388 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 242
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 187 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 234


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 470 LLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQ 324
           +LA+  D K+++ A +    +G  FQ+ DD +D      + GK V  D++
Sbjct: 256 ILADGSDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLK 305


>AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication
           licensing factor MCM2/3/5-type protein protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 388 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 242
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
 Frame = -3

Query: 227 AHVERIKRLYEDLHLPQIYKHQ------------EKAMYDNIIRQIENIPIEAARVXFKK 84
           A   RI +L +D+ +  +Y  Q            E   Y+N+ R++EN+  E +R+    
Sbjct: 251 AQENRISQLMKDIQMKDLYLKQLGATGPPGGIPNENTNYENLQRELENVKAEKSRL---- 306

Query: 83  LLEMTXKRQHEAXRE 39
           L+E    + H A RE
Sbjct: 307 LVESATLKAHYADRE 321


>AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.15 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 179 QIY-KHQEKAMYDNIIRQIENIPIEAARV 96
           Q+Y +HQ K  YD ++R I + P+ A RV
Sbjct: 56  QLYAQHQGKFFYDRLVRHISSGPVIAMRV 84


>Z81050-12|CAN86586.1|  420|Caenorhabditis elegans Hypothetical
           protein C50B6.14b protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 221 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 117
           +ER +R+ +DLHL  I     K   DNI++ IE++
Sbjct: 383 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 417


>Z81050-11|CAN86585.1|  399|Caenorhabditis elegans Hypothetical
           protein C50B6.14a protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 221 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 117
           +ER +R+ +DLHL  I     K   DNI++ IE++
Sbjct: 362 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,004
Number of Sequences: 27780
Number of extensions: 326833
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)