Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K19
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788...   162   2e-40
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012...   161   5e-40
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352...    78   7e-15
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   7.0  
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816...    28   9.3  

>04_04_0724 +
           27578337-27578371,27578492-27578607,27578717-27578875,
           27578954-27579129,27580406-27580683,27580759-27580894,
           27580984-27581095,27581177-27581268
          Length = 367

 Score =  162 bits (394), Expect = 2e-40
 Identities = 80/156 (51%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
 Frame = -2

Query: 754 VPVKDVKRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGA 575
           V V DVK  I WGNHSSTQFPDAS+A       ++ V E+I D+ +L+  FVT VQ+RGA
Sbjct: 210 VHVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGA 269

Query: 574 AVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVTVT 398
           AVI                DHMRDW LGT +  WVSMGV SDGSYG P  V +SFPVT  
Sbjct: 270 AVIKARKQSSSLSAASAACDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCE 329

Query: 397 NGKWKIVEGLTISDFARQMLDATGKELVEEKQEALD 290
            G+W +V+GL I DFAR  ++ +  EL EEK  A +
Sbjct: 330 KGEWSVVQGLEIDDFARSKMETSATELKEEKSIAYE 365


>10_08_0381 +
           17398972-17399014,17400823-17400981,17401066-17401241,
           17401565-17401842,17401938-17402073,17402183-17402294,
           17402421-17402515
          Length = 332

 Score =  161 bits (391), Expect = 5e-40
 Identities = 76/151 (50%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
 Frame = -2

Query: 754 VPVKDVKRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGA 575
           V V DVK  I WGNHSSTQ+PD ++A       +K V E++ DD +L   F++TVQ+RGA
Sbjct: 174 VQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGA 233

Query: 574 AVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVTVT 398
           A+I                DH+RDW LGT E  +VSMGV SDGSYG P  ++YSFPVT +
Sbjct: 234 AIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCS 293

Query: 397 NGKWKIVEGLTISDFARQMLDATGKELVEEK 305
            G+W IV+GL I +F+R+ +DAT +EL EEK
Sbjct: 294 GGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324


>08_02_1600 +
           28133818-28133900,28134240-28134345,28135169-28135255,
           28135354-28135438,28135510-28135691,28135921-28135991,
           28136078-28136168,28136250-28136324,28136436-28136537,
           28136620-28136742,28136823-28136891,28136990-28137058,
           28137158-28137211,28137315-28137368
          Length = 416

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
 Frame = -2

Query: 757 GVPVKDVKRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 578
           GV    V  +  WGNHS+TQ PD  NA   + G  + V E+I D  +L+  F  TVQKRG
Sbjct: 241 GVFYDKVSNMTIWGNHSTTQVPDFLNAK--ING--RPVKEVIKDTKWLEDEFTKTVQKRG 296

Query: 577 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGS-YGTPRDVVYSFPV- 407
             +I                D +R     T E  W S GV + G+ YG   D+V+S P  
Sbjct: 297 GVLIQKWGRSSAASTAVSIVDAIRSLVNPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCR 356

Query: 406 TVTNGKWKIVEGLTISDFARQMLDATGKELVEEKQ 302
           +  +G +++V+ + + DF  + +  +  EL+ EK+
Sbjct: 357 SKGDGDYELVKDVAMDDFLWERIKKSEAELLAEKR 391


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 393 PLVTVTGNEYTTSRGVP*DPSETTPMLTHLSSVPRNQS 506
           P VT  G+E       P DP+E   +L  + ++P + S
Sbjct: 107 PSVTAVGSERCVVNSAPDDPTENVSILDEMRNIPLSTS 144


>03_02_0404 -
           8165211-8165318,8165397-8165733,8166031-8166242,
           8166419-8166526,8166676-8166783,8166884-8166993,
           8167122-8167228,8167349-8167566,8167674-8167841,
           8168033-8168151,8168438-8168525,8168655-8168849,
           8168968-8169271,8169363-8169480,8170034-8170133,
           8170283-8170468
          Length = 861

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 447 DPSETTPMLTHLSSVPRNQSLMWSDAALAAERADD 551
           +PSE +P     ++ P NQ L+W      A   DD
Sbjct: 619 NPSEASPEWVSDNAYPTNQPLIWYKTKFTAPAGDD 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,554
Number of Sequences: 37544
Number of extensions: 367507
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)