Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_K19
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical ... 158 5e-39
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 158 5e-39
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 81 8e-16
U70850-1|AAB09124.2| 104|Caenorhabditis elegans Hypothetical pr... 31 1.2
AC006648-8|AAF39857.1| 302|Caenorhabditis elegans Btb and math ... 29 3.6
U23179-6|AAK68205.1| 341|Caenorhabditis elegans Serpentine rece... 28 6.3
AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interact... 28 8.3
>AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical
protein F46E10.10c protein.
Length = 181
Score = 158 bits (383), Expect = 5e-39
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Frame = -2
Query: 757 GVPVKDVKRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 578
G + +VK VI WGNHS TQFPD ++A G + + D+A+L+G F+ TVQKRG
Sbjct: 18 GTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRG 77
Query: 577 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTV 401
+I DH+ DW GT+ ++VSM V SDGSYG P+ +++SFPVT+
Sbjct: 78 GVIIEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTI 137
Query: 400 TNGKWKIVEGLTISDFARQMLDATGKELVEEKQEALDVCKD 278
G+WKIV+GL+ DFA+ + AT KEL EE+ +AL C D
Sbjct: 138 EGGEWKIVQGLSFDDFAKGKIAATTKELEEERDDALKACDD 178
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 158 bits (383), Expect = 5e-39
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Frame = -2
Query: 757 GVPVKDVKRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 578
G + +VK VI WGNHS TQFPD ++A G + + D+A+L+G F+ TVQKRG
Sbjct: 173 GTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRG 232
Query: 577 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTV 401
+I DH+ DW GT+ ++VSM V SDGSYG P+ +++SFPVT+
Sbjct: 233 GVIIEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTI 292
Query: 400 TNGKWKIVEGLTISDFARQMLDATGKELVEEKQEALDVCKD 278
G+WKIV+GL+ DFA+ + AT KEL EE+ +AL C D
Sbjct: 293 EGGEWKIVQGLSFDDFAKGKIAATTKELEEERDDALKACDD 333
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 81.0 bits (191), Expect = 8e-16
Identities = 35/91 (38%), Positives = 48/91 (52%)
Frame = -2
Query: 757 GVPVKDVKRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 578
G + +VK VI WGNHS TQFPD ++A G + + D+A+L+G F+ TVQKRG
Sbjct: 173 GTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRG 232
Query: 577 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGTE 485
+I DH+ DW GT+
Sbjct: 233 GVIIEKRKLSSAMSAAKAACDHIHDWHFGTK 263
>U70850-1|AAB09124.2| 104|Caenorhabditis elegans Hypothetical
protein F28F9.3 protein.
Length = 104
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -3
Query: 498 SLALKTDGLAWELFQMDLMVLRVMLYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLA 325
S+ K G+ W+ +++ + + +L +HSLL+LP+ G L ++S++L + + S LA
Sbjct: 11 SITRKYFGIRWD-YRISSINMASLLDLHSLLVLPL--GDLPKISIALPISLALSNSLA 65
>AC006648-8|AAF39857.1| 302|Caenorhabditis elegans Btb and math
domain containingprotein 1 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 581 WCCRYCRQENVICSFCC*SCIRPHERLVPW 492
W +CR+E + F C+RP + +VPW
Sbjct: 36 WQLSFCRKEEFVGVFL--RCLRPTDGIVPW 63
>U23179-6|AAK68205.1| 341|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 1 protein.
Length = 341
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -3
Query: 159 PNHGRLKSIIVKAFINVFIFVLEL*MFLKHSDSVVKYFMSFCSLSLSYHI 10
P HG +K +++ F++ F+F + L + + V + S C L + ++
Sbjct: 49 PFHGNIKFMLISYFLSAFLFAVVLALTFGYHILVPLFITSKCDLIIQPYL 98
>AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interacting
protein protein 12 protein.
Length = 862
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 551 HFPGGNNGSTTFLNRCYKCAFQICIIIDNFRNRFLSASNNSYSI 682
H P ++G + LNR + C I ++F + F+ A+N + +
Sbjct: 398 HLPSSSHGECSNLNRTLPASDLNCSIGEDFDSSFVDANNQTLPV 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,867
Number of Sequences: 27780
Number of extensions: 344249
Number of successful extensions: 930
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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