Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K18
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   7.2  
02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946...    27   9.6  

>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 236 YTCHRFKHLHLKL--SLKRNEGIQK-EKKSVDVYLLKQIPWRYINYLNI*VIF*NYSFGT 66
           +T  +  +  +KL  ++  NE +   E K  D  L+  +PW+Y  +L I  I  +  FG+
Sbjct: 158 FTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKYSKFLEINSIPGSCHFGS 217

Query: 65  YNSLF 51
           +  +F
Sbjct: 218 FCCIF 222


>02_02_0364 -
           9457747-9458043,9459815-9459952,9460072-9460141,
           9460928-9460995,9462451-9462582
          Length = 234

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 243 ICIHILFSELFSKIIIRWMSIFVYLPRMF 329
           +CI I+F+ELFS  +  +  I   LP  F
Sbjct: 41  LCIKIVFTELFSDTMRSFSQIIYVLPSFF 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,659
Number of Sequences: 37544
Number of extensions: 194563
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)