Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K18
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine re...    29   3.7  
AL031620-5|CAA20926.1|  277|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine
           receptor, class z protein4 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 390 LSIYFVKLT*SASNMSYYYNI---FFSLFCCLKFYI 488
           L +Y  +L      ++Y+Y I   F+S+ C ++FYI
Sbjct: 38  LYVYVYRLNRKTEKLAYFYPITKHFYSVICSMQFYI 73


>AL031620-5|CAA20926.1|  277|Caenorhabditis elegans Hypothetical
           protein C18B12.5 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 224 RFKHLHLKLSLKRNEGIQKEKKSV 153
           +FKHL +KL    NE I K KK +
Sbjct: 193 KFKHLEIKLEYISNEDIDKIKKMI 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,916
Number of Sequences: 27780
Number of extensions: 223895
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)