Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K14
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U21324-3|AAA62565.2|  166|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    27   9.5  

>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 464 FPIRCGPDHYLCIINIVFVLFTHTIPTQENLSVYHFNVHFYMARKHENIII 312
           FP++ G    L  I+ +   F  + PT+  + VYHFN   +   + + I++
Sbjct: 558 FPVKEGNKFQLKKISWLRRRFLRSKPTRYRICVYHFNRKAFQVNQDDKIVL 608


>U21324-3|AAA62565.2|  166|Caenorhabditis elegans Hypothetical
           protein C35D10.8 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
 Frame = -1

Query: 463 FLSGVDPTITYALLISYLYYLHIQYLPKK-------ICLYITLTYISTWLENTRILLY-- 311
           FLS V    T+ALL+ ++  L I  +P +       + LYI  T    W+   R  ++  
Sbjct: 8   FLSSVGVITTFALLLHFIEILAINGVPSRPIAVFISLSLYIWFTVFGQWVTRARRAIFNE 67

Query: 310 RNISI 296
           RN+ +
Sbjct: 68  RNLLV 72


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 LHDQINIFFHNYITFIVWLKILLKVYI 187
           LH   ++F HNYI F  +L +L K+ I
Sbjct: 220 LHSPQHMFLHNYIFFQSFLVVLFKLII 246


>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 273 LSHSCQFFMEIFLYNNILVFSSHVEMYVKVIYRQIFLGRY 392
           L+ SC F   +FL++ +L   +H  + ++  Y    LG Y
Sbjct: 100 LTPSCSFIRRMFLFSIMLTTLTHASLTLERAYATYQLGAY 139


>AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical
           protein F52C6.8 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 362 HFNVHFYMARKHENIIIQKYLH 297
           HFNV +YMA  H+   +  YLH
Sbjct: 33  HFNVQWYMAVSHKKEDMAVYLH 54


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 362 HFNVHFYMARKHENIIIQKYLH 297
           HFNV +YMA  H+   +  YLH
Sbjct: 33  HFNVQWYMAVSHKKEDMAVYLH 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,218
Number of Sequences: 27780
Number of extensions: 341732
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)