Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K14
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.3  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 297 MEIFLYNNILVFSSHVEMYVKVIY 368
           ++ F YNN  V+ + VE Y  +IY
Sbjct: 190 VQSFDYNNTWVYIADVEGYALIIY 213


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 486 HVRK-RTDISYPVWTRPLLMHY*YRICIIYTYNTYPRKS 373
           H R  +T +  P W R + +H   R+ ++  YNT  ++S
Sbjct: 328 HFRSPQTHVMAP-WVRRVFIHVLPRLLVMRRYNTPSKRS 365


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 394 QYLPKKICLYITLTYISTWLEN------TRILLYRNISIK 293
           +YLP  + + ITLTY+  ++        T I+++RN S++
Sbjct: 26  KYLPLTLIVPITLTYVVIFVTGFVGNIITCIVIWRNPSMQ 65


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 472  YRHFLSGVDPTI-TYALL 422
            +RHF+SG+D  +  YA L
Sbjct: 988  HRHFISGIDSNLHVYAPL 1005


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 564 NYVITY*VKLTNFDSGIMLK*RIKKEH 484
           +YVI+  VK T+F    M+K  +K +H
Sbjct: 425 SYVISGIVKCTDFVDKAMVKQYVKVKH 451


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 457 SGVDPTITYALLISYLYYLHIQYLPKKI 374
           +G+ P + +  L + L+Y  +  L KKI
Sbjct: 267 TGLSPYLRFGCLSTRLFYYQLTDLYKKI 294


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 388 LPKKICLYITLTYISTWL 335
           +P K CL +TL  ++T L
Sbjct: 701 VPSKFCLSVTLLTVATSL 718


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,348
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)