Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_K08
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 149 5e-37
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 134 1e-32
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 26 5.5
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 5.5
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 7.2
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 26 7.2
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.6
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 149 bits (361), Expect = 5e-37
Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 1/218 (0%)
Frame = -2
Query: 769 PCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQHLD 590
PCWY P VG A D+ ++ S+++ +FR Y+ + ELF++ ++T +GQ LD
Sbjct: 108 PCWYLMPGVG-NIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQQLD 166
Query: 589 HVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDICLE 413
+T + D S F+L + + LPV+L + LA + K AQDI +
Sbjct: 167 LLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATPENLKCAQDILII 226
Query: 412 IGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSE 233
+G FQ+QDD++DC+GD TGK+GTDI + KC+W+ AL +CT QR + YG +
Sbjct: 227 LGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQRVILDDNYGRKD 286
Query: 232 PAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 119
+R+K ++E+L++ +++ E++ I + I+ +
Sbjct: 287 SESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 134 bits (324), Expect = 1e-32
Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 3/238 (1%)
Frame = -2
Query: 766 CWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQHLDH 587
CWY VG+ A +S L+ + + FR P Y+ + + F E + T +GQ D
Sbjct: 114 CWYL--VVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQEDL 171
Query: 586 VTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDICLEI 410
++ + + SF L + + LP+ LLL+ N ++K Y + + +
Sbjct: 172 LSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKLSKLL 231
Query: 409 GTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSEP 230
G FQ+QDD++DCFGD GKVG DIQ+ KCTWL A + + Q + +A YG +
Sbjct: 232 GYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQLNLLRAHYGKAGS 291
Query: 229 AHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI--TIEAARVLFKKLLDITYNR 62
++ IK+LY +L +P++Y E M D+I ++I+ I + + +F K + Y R
Sbjct: 292 ENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCIFTKFFQLIYKR 349
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 501 PTIYPFPWVYY 469
P IYPF W YY
Sbjct: 97 PVIYPFDWTYY 107
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -2
Query: 412 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 236
IGT FQ+ DD +D + GK G D++ T + A ++ E + +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318
Query: 235 EPAHVERIKRLYE 197
P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -2
Query: 223 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 131
++R ++ E++H+PQ+Y + Y I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 430 QDICLEIGTMFQIQDDFIDCFGDE 359
Q +C+ IG M DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 462 KMWMKKFINLLKTFAWK*ERCS 397
K +K+F NLLKTFA + ER +
Sbjct: 93 KRRIKRFRNLLKTFACRIERAN 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,974
Number of Sequences: 5004
Number of extensions: 69281
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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