Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K08
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  ILYYCLMLPIVRNIQQLFKENA 103
           IL+Y  +L  +RN +++ +E A
Sbjct: 237 ILFYSRLLSSIRNHEKMLREQA 258


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  ILYYCLMLPIVRNIQQLFKENA 103
           IL+Y  +L  +RN +++ +E A
Sbjct: 237 ILFYSRLLSSIRNHEKMLREQA 258


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 698 RTVYQKRVVKGACDAHFRTPIPTGACR 778
           R++   RVV  AC  +FR  + +  C+
Sbjct: 41  RSLKAHRVVLSACSPYFRELLKSTPCK 67


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -2

Query: 241 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENITI 113
           S EP  +  +   Y+  +      + +K  Y N I  IE I +
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPV 118


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 388 DDFIDCFGDEIKTGKVGTDI 329
           DDF+   G  I T KVG+ +
Sbjct: 18  DDFMKALGVGIMTRKVGSSV 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,654
Number of Sequences: 438
Number of extensions: 4984
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)