Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K07
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.4  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   9.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 338  NYSKQIINIDYVKNNNNID*YIF 406
            +Y KQ+   D++ N+N +  YIF
Sbjct: 3248 DYCKQLFKEDFIVNSNGLKSYIF 3270


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 497 LVKMIVYNSILIEFNEMLIK--NQTKAFSHLRKIYINRYYYYFLRNRCL 357
           L+ + +   I+I F  ++IK   QT+  +     YI RY++  L N C+
Sbjct: 334 LISLAIAGGIVIIF-VLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACM 381


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 157 ISLM*IGDAFQRFIKSXPPL*HESRIKQSNKIYSHSIIRYNKYASR 294
           ISLM +   F+   K  PP+     I+Q    Y+H +  YN    R
Sbjct: 846 ISLMKVS-TFESCTKELPPVTLPENIRQHLDSYNHMVELYNTLLQR 890


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 555 IVIIYTRYFNEVNYLSLIL 499
           I I  TRYF   NYL +IL
Sbjct: 204 IAIFDTRYFKSDNYLQIIL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,561
Number of Sequences: 5004
Number of extensions: 36608
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)