Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K07
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.0  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 284 MLADLCDKTFKIPNSFSLNYSKQIINIDYVKNNNN 388
           +++ L +KT    N++  NY+    N +   NN N
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYN 348


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 497 LVKMIVYNSILIEFNEMLIKNQTKAFSHLR 408
           LV +I+Y + +I     L++N+++  +HLR
Sbjct: 410 LVSIIMYIAFIILQYAGLLRNRSEYLNHLR 439


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 323 NSFSLNYSKQIINIDYVK 376
           N+++ NY K   NI+Y++
Sbjct: 342 NNYNNNYKKLYYNINYIE 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,829
Number of Sequences: 438
Number of extensions: 2559
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)