Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K06
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    27   3.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   3.5  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.2  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   6.2  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   6.2  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   8.2  

>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 163 ADVHNVKCA-DVGTSGRWQNSFI 228
           +D  N+K A D  T+ RWQN F+
Sbjct: 39  SDYQNIKSANDYDTATRWQNQFV 61


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 553 FIVTIIKTYFSNEFYLLHLKCTK 621
           F+++ I  YF+NEF +   +CTK
Sbjct: 17  FLMSSIVLYFNNEFLMFADRCTK 39


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 121 TDILYQVEATPPGVADVHNVK 183
           TDIL Q+E+T   +A+VH  +
Sbjct: 116 TDILSQIESTKASLAEVHKAE 136


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 181 KCADVGTSGRWQNSFI 228
           KCA V TSG W  +F+
Sbjct: 402 KCASVATSGNWLGNFM 417


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 443 LFVRRPRREPLAGVLMISLKLVYSRLSLLQNSRESVQQT 327
           L   + RR P+A  + I LKL+ + +++   + ESV  +
Sbjct: 426 LIQSQKRRSPVAAAIQIPLKLIKNAVTVFLPNPESVDNS 464


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 474 REVSYSLTSVPLRSSPQAGAVSRCAHDQSETSLL 373
           R+  YS  S+P  ++P A +++  A +   TSLL
Sbjct: 325 RQPDYSAHSIPRTAAPYAPSMNMFAQNGPNTSLL 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,591
Number of Sequences: 5004
Number of extensions: 53421
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)