Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K06
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 77  LFPCSYVLIPIIYCTFYII 21
           +FP S++L   IY  FY++
Sbjct: 471 IFPVSFMLFNAIYWIFYVL 489


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 80  WLFPCSYVLIPIIYCT 33
           WL  C+ +L PIIY T
Sbjct: 414 WLGYCNSLLNPIIYAT 429


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +3

Query: 6   YKIILDNIKSTVNNRNEYVTAREQP--VLIWSS----STPQW 113
           Y    DNI++T+ +  +Y+     P  + IW+     + P+W
Sbjct: 29  YNFPNDNIRNTLISNGDYIEENNMPNGMQIWNDKVFITIPRW 70


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 158 PGGVAST*YNMSVSVPLRSRTGPNENWLFPCSYVLIP 48
           P  VA+T  +MS+      +TG N N   P S  + P
Sbjct: 730 PTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPP 766


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,190
Number of Sequences: 438
Number of extensions: 3939
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)