Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_K04
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 189 4e-49
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 187 1e-48
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.60
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 28 1.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.8
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.2
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 4.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 5.6
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 7.4
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.4
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar... 25 9.8
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 9.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 9.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 189 bits (460), Expect = 4e-49
Identities = 95/220 (43%), Positives = 134/220 (60%), Gaps = 2/220 (0%)
Frame = -1
Query: 660 RIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXX 481
R+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 68 RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127
Query: 480 DEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAES 301
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+
Sbjct: 128 EFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIET 187
Query: 300 KKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 121
++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ I
Sbjct: 188 EELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKI 247
Query: 120 RADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRXKQK 7
R DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 248 REDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 187 bits (456), Expect = 1e-48
Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 2/220 (0%)
Frame = -1
Query: 660 RIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXX 481
R+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 68 RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127
Query: 480 DEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAES 301
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+
Sbjct: 128 EFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIET 187
Query: 300 KKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 121
++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ I
Sbjct: 188 EELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKI 247
Query: 120 RADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRXKQK 7
R DPS +K K+ + + +RKLT ERK R K
Sbjct: 248 REDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.1 bits (62), Expect = 0.60
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 156 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRXKQKK 4
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKK 501
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 129 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRXKQKK 4
E I PS K+K+ KK+ K+K KR A + + +KK
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -1
Query: 225 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 64
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 531 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 623
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 159 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 46
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -1
Query: 168 TADAIEAIYKKAHEAIRADPSHKKKELK 85
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 141 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRXKQKKA 1
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -1
Query: 153 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRXKQKKA 1
EA K+ + ++ + K++EL++ QKR K+K E+K + +Q++A
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQEA 682
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -1
Query: 138 KAHEAIRADPSHKK-KELKKDSVKQKRWNKRK-LTLAERKNRXKQK 7
K E I + K+ +ELKK K+K+ +K+K L LA+ + R +++
Sbjct: 571 KLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRRE 616
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -1
Query: 294 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 115
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 114 DPSHKKKE 91
+ KKE
Sbjct: 419 SSENNKKE 426
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 249 AEYMRSLEQDDEDSFKRQFSKYIK 178
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC8C9.10c |||ribosome biogenesis protein
Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 63 RWNKRKLTLAERKNRXKQK 7
+W ++K TL E+K R K K
Sbjct: 35 QWKQKKSTLEEKKERRKMK 53
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 102 KKKELKKDSVKQKRWNKRK 46
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 153 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRXKQKKA 1
EAI + EA RA +EL + QKR +R E K R +++ A
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMA 839
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,230
Number of Sequences: 5004
Number of extensions: 47455
Number of successful extensions: 234
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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