Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K02
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   6.0  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   6.0  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   6.0  

>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 350 PVYCRSIIKTIYKTLYLEWMIRFNQED 270
           P+YC S+ KTI +T       R N ED
Sbjct: 39  PLYCESVTKTIQQTYEGLVQKRINNED 65


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 157  STKWDRSNQILRNPNKSPIWFTKLKPH*NYFE 252
            ST  D   Q+L +PN S +W + +  H N  E
Sbjct: 1424 STAADFERQLLSSPNSSLLWISYMAYHLNLNE 1455


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 161 VLNRFVSVVCKQIERAGGNYIYF 93
           V+N  VSV+C+   RA  NY+ F
Sbjct: 188 VVNAAVSVICELARRAPKNYLEF 210


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 241 NYFESAKRC*SSWLNRIIHSRYSVL 315
           +Y E+A  C S W   I H + SVL
Sbjct: 124 HYGENAPACDSQWPREIFHPKQSVL 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,492
Number of Sequences: 5004
Number of extensions: 61150
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)