Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K02
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    29   3.5  
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    28   6.2  
08_02_1461 - 27299891-27301870                                         28   8.2  

>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 448 RCNYT*NLRTYISRWEAHLRCGCL 519
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 547 PGVKWLLEPIDIHNANAPPILRYKF*GFKYSYNGYPTLQTETH 419
           P +  L EPI +   NA    +Y+  G KY  +G+PTL    H
Sbjct: 86  PVLAGLSEPIIVAKVNAD---KYRKLGSKYGVDGFPTLMLFIH 125


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 416 LLHGRNRQGGGTHPRGL 366
           LL GR R GGG H RGL
Sbjct: 290 LLRGRRRGGGGGHRRGL 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,464
Number of Sequences: 37544
Number of extensions: 391263
Number of successful extensions: 793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)