Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K02
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-6|CAA97796.2|  853|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73425-9|CAA97791.2|  853|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   5.6  

>Z73426-6|CAA97796.2|  853|Caenorhabditis elegans Hypothetical
           protein F12F6.1 protein.
          Length = 853

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 533 PLNTRWAVSSSTHLSNKKKDILNGISVDFSESXTXXXXXXRFNRILYS 676
           P+     +SS+ HL+N K  +  GIS   S + T      RF R + S
Sbjct: 669 PITKEALLSSTEHLNNSKSSVPTGISEASSSTTTPRASLARFERRMTS 716


>Z73425-9|CAA97791.2|  853|Caenorhabditis elegans Hypothetical
           protein F12F6.1 protein.
          Length = 853

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 533 PLNTRWAVSSSTHLSNKKKDILNGISVDFSESXTXXXXXXRFNRILYS 676
           P+     +SS+ HL+N K  +  GIS   S + T      RF R + S
Sbjct: 669 PITKEALLSSTEHLNNSKSSVPTGISEASSSTTTPRASLARFERRMTS 716


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 443 VAVVTILETLELISQDGRRICVVDVYGLQ*PLNTRW 550
           ++V+  + +++LI    RRI    VYG++ P+N  W
Sbjct: 210 ISVIMGMASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 393 GWWYPPARTH-KSFTTSLLPINY 328
           G WYP   T   +FTT+L PINY
Sbjct: 525 GSWYPENFTEIDNFTTTLYPINY 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,101
Number of Sequences: 27780
Number of extensions: 346977
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)