Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J23
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    93   2e-20
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    27   1.5  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    26   2.6  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.1  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 92.7 bits (220), Expect = 2e-20
 Identities = 50/107 (46%), Positives = 65/107 (60%)
 Frame = -3

Query: 340 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 161
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 160 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 20
             ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   KT K+I+K
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKK 109


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 124 KKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKNLSS 8
           K Y+P   R   ++++   +TK   K   +K  +KN  S
Sbjct: 171 KSYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKKNSKS 209


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 139 NHYKNKKYKPLDLRAKKTRAMRKAL---TKHEAKIKTRKEIRKNLSSHL 2
           +H KN++Y  L+ + +K     KAL   TKH  K      I  +  SH+
Sbjct: 35  SHIKNRQYYILEKKIRKLMFAMKALLEETKHSTKDDVNLVIPGSTWSHI 83


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = -2

Query: 170 VSPEDEGQS*KPLQKQEIQAFRFKSQEDPCYAQGSY*TRSKDQDEERDQKESLFPP 3
           + P +E ++ +P Q +E +    K  E+P   +        +++EE +++E +  P
Sbjct: 95  IQPPEEVKT-EPPQPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDP 149


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 172 VYHQKMKVN---LRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 47
           VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,093
Number of Sequences: 5004
Number of extensions: 21690
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)