Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_J23
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 94 4e-20
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 55 2e-08
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 29 1.9
12_02_0172 - 14891923-14892102,14892894-14892980 28 2.5
12_01_0152 - 1168928-1169377 28 3.3
11_01_0155 - 1287003-1287452 28 3.3
02_05_0362 + 28291891-28292263,28292432-28292616 28 3.3
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 27 4.4
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 27 4.4
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 4.4
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 27 5.8
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 5.8
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 27 7.7
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 7.7
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 93.9 bits (223), Expect = 4e-20
Identities = 51/99 (51%), Positives = 62/99 (62%)
Frame = -3
Query: 349 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 170
M ++K ELR K+ L+ LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 169 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 53
QK + LR YK K PLDLR KKTRA+R+ LTKH+
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQ 99
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 55.2 bits (127), Expect = 2e-08
Identities = 40/106 (37%), Positives = 53/106 (50%)
Frame = -3
Query: 361 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIAR 182
VTV M ++K LR ++ L+ LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 181 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 44
Y K K PLDLR KKT A+R+ LTKH+ +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 109 LDLRAKKTRAMRKALTKHEAKIKTRKEIRKNLSSH 5
L L+ +A ++ L+K EA +++ K+ +KNLS H
Sbjct: 581 LSLKNDTDKASKQRLSKLEADLESLKQKQKNLSEH 615
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 253 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 80
+A + GV K+S A R +V H+ +++ RNH ++KY+ L +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59
Query: 79 MRKALTK 59
R+A TK
Sbjct: 60 SRRAKTK 66
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 247 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 158
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 247 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 158
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>02_05_0362 + 28291891-28292263,28292432-28292616
Length = 185
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 130 KNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKNLSSHL 2
KNKK K + KK +TKH +I + + +R S+ L
Sbjct: 37 KNKKKKKKKKKKKKKCCSTAEITKHSVRILSHRTVRPFCSTRL 79
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 121 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEI 26
KY+P D AKK R +++A + E K ++ +K I
Sbjct: 94 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 126
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 121 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEI 26
KY+P D AKK R +++A + E K ++ +K I
Sbjct: 78 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 110
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 166 HQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 29
H K + ++ NK+ L L+ K+ + + L + E KI R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -3
Query: 259 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 80
L A+ + K R +RKA A++ ++ K + + KK + D+ AKK +
Sbjct: 1329 LEAAEAAKRLEEKKQNEREMRKAAAKLERERLKQEKELKQKQEEQKKKRDADVAAKKRQR 1388
Query: 79 MRKALTKHEAKIKTRKEIRK 20
+ + + K K +E RK
Sbjct: 1389 GEEERKEKQRKRKCTEEARK 1408
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 220 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 101
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 148 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKNLSSHL 2
NLR+ ++++ + L AKK + + + AK K KE+ K+L++ L
Sbjct: 644 NLRHRCEHQEVE-LHKSAKKVQEAMTLVAEESAKSKAAKEVIKSLTAQL 691
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 155 HLLVIHNVNTCDSFSYNTDLG 217
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,796,000
Number of Sequences: 37544
Number of extensions: 128802
Number of successful extensions: 362
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -