Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J23
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   103   5e-23
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   1.7  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   1.7  
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    26   9.2  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score =  103 bits (247), Expect = 5e-23
 Identities = 55/111 (49%), Positives = 69/111 (62%)
 Frame = -3

Query: 349 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 170
           M K+KC  LR +               L  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 169 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKN 17
            +Q  K  LR  Y + KYKP+DLR KKTRA+R+ LT HE  +++ K+  K+
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKS 111


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 130 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKE 29
           K   ++ +D   K+ R +RKA+TK E  KIK  KE
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKE 302


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 130 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKE 29
           K   ++ +D   K+ R +RKA+TK E  KIK  KE
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKE 374


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 130 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKE 29
           K   ++ +D   K+ R +RKA+TK E  KIK  KE
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKE 374


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 409 NEFGRPMFFKVR-FEENVTVKMGKVKCSE 326
           N+   PM F +R FEE V  KMG V+C +
Sbjct: 281 NKVHGPMPFSLRSFEEEVKAKMGVVECEK 309


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 175 IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKN 17
           I+ H     N  +  K +K KPL++  ++   M  ++TK  A ++ R+E  +N
Sbjct: 110 ILKHGVEAKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRN 162


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 169 YHQKMKVNLRNHYKNKKY-KPLDLRAKKTRAMRKALTKH 56
           Y  ++  +L NHYKN  + +    R  K  A+ K+L KH
Sbjct: 332 YTNQLASDLHNHYKNDLHLEQYAQRVLKMMAIVKSLQKH 370


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 106 DLRAKKTRAMRKALTKHEAKIKTRKEIRKN 17
           DL+ +K   M++A    EA++K +KE  K+
Sbjct: 318 DLKMRKRETMKRAEKMKEAELKKKKESSKS 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,793,212
Number of Sequences: 27780
Number of extensions: 121063
Number of successful extensions: 374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)