Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_J19
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical ... 31 0.80
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 30 1.8
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 30 1.8
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 29 2.4
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 4.3
AL032640-2|CAA21643.2| 502|Caenorhabditis elegans Hypothetical ... 29 4.3
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 4.3
AF077542-8|AAC26300.2| 342|Caenorhabditis elegans Serpentine re... 29 4.3
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 5.6
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC084158-18|AAK68583.1| 300|Caenorhabditis elegans Hypothetical... 28 7.4
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF408762-1|AAO27841.1| 242|Caenorhabditis elegans unknown prote... 27 9.8
AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical ... 27 9.8
>AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical
protein Y46H3D.6 protein.
Length = 345
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -2
Query: 297 HFP-IVKYQEYHKMLSFCLKIKGKH 226
H P ++KYQE HKM SF L++ +H
Sbjct: 121 HIPKMIKYQEMHKMCSFDLQLVSQH 145
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 626 QSSGPSSFTAAPAPLSVPVTAPRH 555
+ S ++ TA PAP S PV PRH
Sbjct: 411 KKSSSANVTAPPAPTSAPVPTPRH 434
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 641 EVSPTQSSGPSSFTAAPAPLSVPVTAPRHPPTPFQVFFILFTIGHNFHTHTIL 483
+V P Q+S PSS T A PL P H P P Q L + +++ IL
Sbjct: 89 DVPPPQTSQPSSDTTA-EPLPSPAATRIHHPIPVQYNTDLIAAATSVNSNVIL 140
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 641 EVSPTQSSGPSSFTAAPAPLSVPVTAPRHPPTPFQVFFILFTIGHNFHTHTIL 483
+V P Q+S PSS T A PL P H P P Q L + +++ IL
Sbjct: 89 DVPPPQTSQPSSDTTA-EPLPSPAATRIHHPIPVQYNTDLIAAATSVNSNVIL 140
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 4 MSFTNSSHHFVSSFSAPNLALSSIFQLSSQIVSQPXN 114
+S+ ++ H F FS P+ AL +I + S I+S P N
Sbjct: 681 ISWGSAFHAFAQPFSVPHSALIAIQTVISSIISAPLN 717
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -3
Query: 593 PAPLS-VPVTAPRHPPTP 543
P PLS + VT PRHPP+P
Sbjct: 304 PMPLSEISVTDPRHPPSP 321
>AL032640-2|CAA21643.2| 502|Caenorhabditis elegans Hypothetical
protein Y43F8A.2 protein.
Length = 502
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 623 SSGPSSFTAAPAPLSVPVTAPRHPPTP 543
++G + +A P P P AP +PP P
Sbjct: 31 TAGSTDTSATPMPTDAPTAAPANPPPP 57
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -3
Query: 593 PAPLS-VPVTAPRHPPTP 543
P PLS + VT PRHPP+P
Sbjct: 304 PMPLSEISVTDPRHPPSP 321
>AF077542-8|AAC26300.2| 342|Caenorhabditis elegans Serpentine
receptor, class z protein64 protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 68 VPFFNFHHKLFLSLXINVHATLXLTRYQHI 157
VPF++FH +FLS+ + + + + ++ H+
Sbjct: 205 VPFYSFHVLIFLSVLLYIPIMINIRKHSHL 234
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 629 TQSSGPSSFTAAPAPLSVPVTAPRHPPTP 543
T SS SS T +PAP P P+ PTP
Sbjct: 1295 TTSSTISSTTTSPAPTQKPRIVPKDFPTP 1323
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 632 PTQSSGPSSFTAAPAPLSVPVTAPR-HPPTP 543
P ++ T AP P PVTAP +PP P
Sbjct: 208 PPPTTNKEVTTVAPVPKPAPVTAPAPNPPAP 238
>AC084158-18|AAK68583.1| 300|Caenorhabditis elegans Hypothetical
protein Y69A2AR.9 protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 632 PTQSSGPSSFTAAPAPLSVPVTAPRHPPT 546
P GP F ++P+P V AP P T
Sbjct: 139 PAPGPGPGPFASSPSPKDVTAEAPTPPKT 167
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 579 GPGHRAPPPADAVPGLLHP-LHDRTQLSYTHNLNTRSLHIHTH 454
G G APPP PG + P +H T + +++T H H
Sbjct: 15 GHGGYAPPPVHGAPGYMPPTVHVHTDGGHHGHMDTHHHHDSHH 57
>AF408762-1|AAO27841.1| 242|Caenorhabditis elegans unknown protein
protein.
Length = 242
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 623 SSGPSSFTAAPAPLSVPVTAPRHPPTPFQVF-FILFTIG 510
++ PS+ TA PAP PVTAP P Q+ I F IG
Sbjct: 151 TAAPSTSTA-PAPPKAPVTAPPAPQKSAQLLGKIDFAIG 188
>AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical
protein F59H5.1 protein.
Length = 758
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 623 SSGPSSFTAAPAPLSVPVTAPRHPPTPFQVF-FILFTIG 510
++ PS+ TA PAP PVTAP P Q+ I F IG
Sbjct: 667 TAAPSTSTA-PAPPKAPVTAPPAPQKSAQLLGKIDFAIG 704
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,589
Number of Sequences: 27780
Number of extensions: 282024
Number of successful extensions: 1222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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