Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J18
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0743 + 24069752-24070483,24071890-24072345                       27   7.6  
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979...    27   7.6  

>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 404 GGLEVFSSRDGRRESGDICEARTDQNXDIVENVHLGVLS 520
           GG    S+ D +RES     A  DQ  ++   +H+G+ S
Sbjct: 102 GGAASCSNNDDKRESPSAAAAADDQAAEVTVALHIGLPS 140


>06_03_0458 -
           20995834-20996004,20996404-20997309,20997778-20997942,
           20998024-20998353,20998471-20998527,20998579-20998692,
           20999220-20999381,20999465-20999527,21001100-21001207,
           21001598-21001675,21001771-21001902
          Length = 761

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 434 GRRESGDICEARTDQNXDIVENVHLG 511
           G  +SG++ E   D    +VENVH G
Sbjct: 666 GGNKSGELLERAEDMGSALVENVHFG 691


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,952,696
Number of Sequences: 37544
Number of extensions: 161931
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)