Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_J16
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 185 7e-48
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.74
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.3
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 28 1.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 3.0
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 3.9
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 5.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 5.2
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 5.2
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.9
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 9.1
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.1
>SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 185 bits (450), Expect = 7e-48
Identities = 96/172 (55%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Frame = -2
Query: 774 REEDKVKFEGLCKVMKXILDXKVEKVVVSNRLVESPCCIVTAQYGWSANMERIMKAQALR 595
RE+ + ++E K +K IL KVEKVVVSN++V SPC + T QYGWSANMERIMKAQALR
Sbjct: 536 REKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALR 595
Query: 594 DTSTMGYMAAKKHLEINPDHSIVETLRQKAEAD-KNDKAVKDLVILLYETALLSSGFTLD 418
DTS YM+++K EINP I+ L++K E + D++VKDL +LYETALLSSGFTLD
Sbjct: 596 DTSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLD 655
Query: 417 EPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 262
+P +A RI R+I LGL IDE+E +EE ++ V E +A+ S+MEEVD
Sbjct: 656 DPSAYAQRINRLISLGLSIDEEEEAPIEEISTESV-AAENNAE--SKMEEVD 704
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 345 IQVEEPASGDVPPLEGDADDASRMEEVD 262
IQ + P D PP++ DAD+ EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 630 NMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 508
N R M + L + ++A KK LE+N IV TLRQ+
Sbjct: 117 NTIRSMSSVVLASALSNNFIAQKKALEMNIMPKIVNTLRQE 157
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = +1
Query: 613 HDTFH--VGRPSILSSNNT-----ARRLHKSVRDNNFLNFVVQDVLHH 735
H+TF VG +++S+NT RL K + + F NF+ +++LH+
Sbjct: 197 HETFSHPVGCLIVITSHNTNPMATVMRLFKEINNAPFPNFISKEILHY 244
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 39 FSKVASIPHSHKTKLQSCQSS 101
F KV+++ +S KTKL +C SS
Sbjct: 421 FPKVSTLDNSFKTKLPNCNSS 441
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = -2
Query: 513 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 334
Q AE + + ++ +L+ + + + +D ++ + ++ I ED+ +VE
Sbjct: 22 QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81
Query: 333 EPASGDVPPLEGDADDASRMEE 268
+P SG+ L + D+ + E+
Sbjct: 82 KPVSGNQFSLLSEEDEVDKKEK 103
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 768 EDKVKFEGLCKVMKXILDXKVEKVVV--SNRLVESPC 664
EDKV G+ ++++ +LD + VV +VE PC
Sbjct: 725 EDKVSTRGIEQLLEGVLDQPITLVVTKKDGSVVEIPC 761
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 525 ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 355
E+ R+K E+DKN ++ K + E+ G + D V R+YR G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 301 LQWRHVSRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 411
L+W + RS N+N ++ Q HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 611 RLRLYVTHPQWDTWLRRSIWKSIL 540
+L +Y + QW+ W R WKSI+
Sbjct: 8 KLHIYASPEQWEKWSPR--WKSIV 29
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = +1
Query: 649 SSNNTARRLHKSVRD-----NNFLNFVVQDVLHH 735
S+N ARRLHK+ R+ N ++ +V D H
Sbjct: 770 SANGAARRLHKAAREICLRCANAISMIVDDCRKH 803
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 476 RILLSYCMKLPCCLLASRLMSPKSML---PVSIE*SNWVLVLMKMSRFRLKSL 327
+IL+ + PC +RL PK +L VS++ L ++SR L S+
Sbjct: 83 KILIKWIRTTPCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSV 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,533
Number of Sequences: 5004
Number of extensions: 59743
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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