Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J16
         (775 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.1  
AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    25   2.6  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    25   2.6  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    25   2.6  
AY645021-1|AAT92557.1|  163|Anopheles gambiae even-skipped protein.    24   6.0  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   6.0  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   6.0  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   6.0  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 771 EEDKVKFEGLCK-VMKXILDXKVEKVVVSNR 682
           +E+KVKFE  C+ +++ +LD +  KV    R
Sbjct: 691 DEEKVKFERSCRTIIEQLLDQQRRKVAALER 721


>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 602 LYVTHPQWDTWLRRSIWKSILITQLW 525
           LY   PQWD  L   +W +  +TQ++
Sbjct: 305 LYFIKPQWDRILEAKVWYA-AVTQVF 329


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 602 LYVTHPQWDTWLRRSIWKSILITQLW 525
           LY   PQWD  L   +W +  +TQ++
Sbjct: 305 LYFIKPQWDRILEAKVWYA-AVTQVF 329


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 279 EMHHQHHPPMAARLQKQALQPESAHLHQYQDPV 377
           +   Q H  +    Q++ LQPE  H  Q Q  V
Sbjct: 161 QQQSQSHRQVVIGTQQECLQPEQQHQRQQQHTV 193


>AY645021-1|AAT92557.1|  163|Anopheles gambiae even-skipped protein.
          Length = 163

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 279 EMHHQHHPPMAARLQKQALQPES 347
           ++HHQ H P+A+     +L P S
Sbjct: 72  QLHHQGHSPVASPHSALSLSPVS 94


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 534 SIVETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDE 415
           ++ E   + +E  K DKA + L  ++YET L  +   L+E
Sbjct: 202 TLEEEKEELSEYQKWDKARRTLEYVIYETELKETRKQLEE 241


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +3

Query: 561 SSQPCIPLWMCHVEPE--PS*YVP 626
           ++QP +P W   ++PE  P  Y P
Sbjct: 87  TNQPIVPFWQADLKPELSPKLYQP 110


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 285 HHQHHPPMAARLQKQALQPESAHLHQYQDP 374
           H+Q+H   A +L  Q ++ ESA +    DP
Sbjct: 7   HNQNHSYAAFQLMWQTIREESADIVLIADP 36


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,573
Number of Sequences: 2352
Number of extensions: 15493
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)