Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J14
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    27   2.8  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    27   2.8  
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa...    27   2.8  
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos...    27   2.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   4.9  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    26   4.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.9  

>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  LFCLFIKLYNKIF*SCTYFIK--FDWKLR*LWTKIAIYAINKKTDTDK 205
           LF  F K +N  +       +  F W L  +W+ I ++A++KK +  K
Sbjct: 82  LFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSIIIVFAVDKKFEVQK 129


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  LFCLFIKLYNKIF*SCTYFIK--FDWKLR*LWTKIAIYAINKKTDTDK 205
           LF  F K +N  +       +  F W L  +W+ I ++A++KK +  K
Sbjct: 82  LFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSIIIVFAVDKKFEVQK 129


>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
           family 9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  LFCLFIKLYNKIF*SCTYFIK--FDWKLR*LWTKIAIYAINKKTDTDK 205
           LF  F K +N  +       +  F W L  +W+ I ++A++KK +  K
Sbjct: 82  LFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSIIIVFAVDKKFEVQK 129


>SPBC1348.01 |||S. pombe specific DUF999 protein family
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  LFCLFIKLYNKIF*SCTYFIK--FDWKLR*LWTKIAIYAINKKTDTDK 205
           LF  F K +N  +       +  F W L  +W+ I ++A++KK +  K
Sbjct: 82  LFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSIIIVFAVDKKFEVQK 129


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +2

Query: 374 HTQHHETYFFIYIITLSNTMKN------FK*YTHFSRSTRTMNLSYSNMCKNRHVSLCLV 535
           H +  E Y +I+ I  S T+ N      +     FS S+      Y N+ K  +VSL + 
Sbjct: 79  HKKTLEVYDYIFTIIGSKTLTNELSTWSYGLTPFFSISSIKTKHDYINIIKKHYVSLGVG 138

Query: 536 FFKCF*LIFVGEMNHL 583
              CF  +F+  ++ L
Sbjct: 139 IRPCFQAVFISLLSGL 154


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 254 PQKWKPFDTKQKKAGKTLHRKKTTSNTIIYLHSSHLY 364
           P+ +  FD    K    + ++++ S   IY HSS  Y
Sbjct: 356 PRNYSSFDALPSKNAPLVRQEQSASKKTIYAHSSRGY 392


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 131 FDWKLR*LWTKIAIYAINKKTDTDK 205
           F W L  +W+ I ++A++KK +  K
Sbjct: 105 FRWPLLIIWSIIIVFAVDKKFEVQK 129


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 665  WNNIFVSTSTYLF-IKKKSIC*YSDAEKKDGSFHQQKS 555
            WN++ V TST+L  +    I  Y D  K    FH  K+
Sbjct: 1623 WNDLLVRTSTFLLEVYDLCIYNYDDGLKLLSCFHMYKN 1660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,936
Number of Sequences: 5004
Number of extensions: 51852
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)