Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J14
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605...    29   2.9  
12_02_0801 + 23308993-23309091,23309503-23309604,23310212-233103...    28   6.7  
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525...    28   6.7  

>04_04_1400 -
           33259716-33260069,33260172-33260219,33260471-33260596,
           33260850-33260900,33260963-33261055,33261217-33261272,
           33261465-33261522,33262306-33262365,33262513-33262623,
           33263368-33263949,33264026-33264097
          Length = 536

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 658 IFLCLLVLTCS*KRKVFVNIQMQKKKMVHFT 566
           + L ++VL  S  RK+  NI++ K++MVH T
Sbjct: 350 VLLVIIVLCLSMARKIKENIELTKRRMVHPT 380


>12_02_0801 +
           23308993-23309091,23309503-23309604,23310212-23310388,
           23310473-23310715,23310896-23310947,23310998-23311145,
           23311240-23311321,23311462-23311557,23311641-23311742,
           23312048-23312164,23312329-23312400
          Length = 429

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 139 PIKFNEICAGSENFVVQLDEQTEQTLILNV 50
           P+ F  + + SE+F+ +LDE+T  +L   V
Sbjct: 281 PLPFGRVLSPSESFIHELDEKTSSSLKFTV 310


>06_01_0721 -
           5255422-5255790,5256287-5256660,5256845-5257192,
           5257369-5257497,5257585-5257658,5257745-5257816,
           5257901-5257969,5258059-5258130,5258208-5258279,
           5258512-5258583,5258735-5258806,5258887-5258958,
           5259050-5259121,5259203-5259274,5259427-5259498,
           5259599-5259670,5259764-5259832,5260072-5260143,
           5260428-5260499,5260579-5260650,5260919-5260990,
           5261015-5261161,5261249-5261378,5262212-5262290
          Length = 931

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 239 LYHHSPQKWKPFDTKQKKAGKTLHR 313
           LY H PQ +K F+T+ +  G   HR
Sbjct: 628 LYAHYPQSFKEFETELETVGSIKHR 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,202
Number of Sequences: 37544
Number of extensions: 245542
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)