Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J14
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    28   6.0  
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    28   6.0  

>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 353 SHLYKLSHTQHHETYFFIYIITLSNTMKNFK*YTHFSRSTRTMNLSYSNMCKNRHVSLCL 532
           SH +  +HT +H  Y  I +  L NT+     +  FS     +  S+S   +  H  L L
Sbjct: 50  SH-WNSAHTMNHHIYVIIMLYFLFNTLFFLSDFLRFSLPATGILTSWSASIQPNHF-LNL 107

Query: 533 VFFKCF 550
           +FF  F
Sbjct: 108 IFFFTF 113


>AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical
           protein F57E7.3 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 440 FK*YTHFSRSTRTMNLSYSNMCKNRHVSLCLVFFKCF*LIFVGEMNHLFFLHLNINK 610
           FK  T   ++T      + N+C    V L +VF  C  L   G  NHL  L  NI +
Sbjct: 223 FKTRTISQKTTEMQKKLFINLCIQITVPLVVVFVPCVYLNISGLFNHLDMLIDNIGQ 279


>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 706 QIYEFR*KYLLLKFGTIFLCLLVLTCS 626
           ++ EFR KY+  K G +F CLLV   S
Sbjct: 379 KLTEFRKKYVSSKLGRLFECLLVAAVS 405


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 706 QIYEFR*KYLLLKFGTIFLCLLVLTCS 626
           ++ EFR KY+  K G +F CLLV   S
Sbjct: 379 KLTEFRKKYVSSKLGRLFECLLVAAVS 405


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 706 QIYEFR*KYLLLKFGTIFLCLLVLTCS 626
           ++ EFR KY+  K G +F CLLV   S
Sbjct: 379 KLTEFRKKYVSSKLGRLFECLLVAAVS 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,621
Number of Sequences: 27780
Number of extensions: 286339
Number of successful extensions: 640
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)