Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J12
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   3.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.5  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.6  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 265 TAGATNIHFIPRS-SYVQVRWNLQKQLRFRTHISRNE 158
           +AG++++H +        + W L++Q +  +HISRNE
Sbjct: 51  SAGSSSLHGLNSLIDSGSIHWQLREQEQSNSHISRNE 87


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 293  GELWRLVEPHGGRHQHPFYSKKQLRSGKVEPSKAIEI 183
            G  W +V+P     Q   Y+ ++ R+G +EP   + I
Sbjct: 2037 GGSWVVVDPTINEDQMEMYADEESRAGVLEPEGMVSI 2073


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 420 KLYISSGPAFLPPCIRWGIRNHSG 349
           +L ++S  A LP CI W + N +G
Sbjct: 138 QLDLASNLASLPLCIHWSVENGAG 161


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 43  EEQSKLLNCKXFRCAVRG 96
           +E+S L  C+ F CA+RG
Sbjct: 205 DEKSALDGCRFFTCAIRG 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,894
Number of Sequences: 5004
Number of extensions: 62141
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)