Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J12
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187...    30   2.2  
08_01_1056 + 10752363-10752503,10752711-10752771,10753483-107536...    29   3.9  
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193...    29   5.1  
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797           28   6.8  
10_08_0124 + 14992399-14993478                                         28   9.0  
05_02_0026 + 5716467-5716655,5716833-5718797                           28   9.0  

>07_03_0244 -
           15715047-15715163,15716672-15716824,15718629-15718748,
           15718830-15719045,15719902-15719968,15720051-15720125,
           15720607-15720698,15721053-15721154,15721642-15721711,
           15721788-15721846,15721947-15722031,15722443-15722520,
           15722627-15722725,15722819-15722910,15725572-15725661,
           15725937-15725995,15727966-15728281,15728627-15728702,
           15729998-15730308,15730577-15730634,15731082-15731092,
           15731247-15731397,15733372-15733778
          Length = 967

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 444 KGLACQCQCLLSSVVSTVLEISRQTLTSP 530
           +G  C+C  +LS+ V+ +L  ++Q +T P
Sbjct: 109 EGFECRCAVVLSAAVAAILAFTQQNVTGP 137


>08_01_1056 +
           10752363-10752503,10752711-10752771,10753483-10753620,
           10754667-10754883,10755760-10755861,10756030-10756133,
           10756383-10756483,10756563-10756607,10756724-10756855
          Length = 346

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 429 INMSTKGLACQCQCLLSSVVSTVL 500
           +N  TKG  C C CLL SVV+ V+
Sbjct: 312 LNKRTKG-GCSCMCLLLSVVAIVI 334


>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
            32619687-32619776,32620389-32620462,32621149-32621260,
            32621413-32621468,32621826-32621880,32621965-32622021,
            32622696-32622797,32623467-32623547,32623756-32623808,
            32625245-32625314,32626540-32626603,32627339-32627487,
            32627564-32627719,32628011-32628108,32628763-32628847,
            32628932-32628997,32629066-32629125,32629408-32629494,
            32630307-32630360,32630538-32630576,32630651-32630779,
            32630859-32630911,32630984-32631032,32632240-32632298,
            32633111-32633259,32633338-32633492,32633719-32633847,
            32633932-32634017,32634220-32634335,32634429-32634541,
            32635335-32635458,32635540-32635658,32636289-32636490,
            32636586-32636757,32637852-32638176,32638442-32638529,
            32638970-32639059,32639169-32639370,32639681-32639705
          Length = 1450

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 447  GLACQCQCLLSSVVSTVLEISRQTL-TSPNYKNE 545
            G  C    L SS V +VL+I    L TSPNYKN+
Sbjct: 997  GSNCSKGNLESSYVKSVLDIYELVLQTSPNYKND 1030


>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
          Length = 918

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 472 CYPLWYQQYWRLVVRPLQVQTTKMNFSEIYFIQNY 576
           CYP     Y  L+  P+ V +T+ +FS++  ++NY
Sbjct: 838 CYPNVLVAYRILLTVPVTVASTERSFSKLKLLKNY 872


>10_08_0124 + 14992399-14993478
          Length = 359

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 46  EQSKLLNCKXFRCAVRGILCELLGQLTVWPSNIH 147
           ++S+ LN   F  AVR ++ E     TV PSN+H
Sbjct: 141 QRSEYLNDDCFAIAVRLVITEEPSSFTVPPSNMH 174


>05_02_0026 + 5716467-5716655,5716833-5718797
          Length = 717

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 433 TCQRKDLRANVNVCYPLWYQQYWRLVVRPLQVQTTKMNFSEIYFIQNYFT*NK 591
           T   K ++  ++V +PL Y+    L+V P+   TTK  FS     +  F  N+
Sbjct: 627 TLALKMVQTEMHVAFPLVYRLIELLLVLPVATPTTKRAFSARNIFEEDFCDNR 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,724,963
Number of Sequences: 37544
Number of extensions: 383042
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)