Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J12
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    30   2.0  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 429  INMSTKGLACQCQ-CLLSSVVSTVLEISRQTLTSPNYKNEFF---RNIFY 566
            I M+ K +   C  C+L  V      ++RQ LT PN K+  +   RNIFY
Sbjct: 1025 IQMAAKMVWSMCYICVLLLVPLMAFGVNRQALTEPNVKDWHWLLVRNIFY 1074


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 429 INMSTKGLACQCQ-CLLSSVVSTVLEISRQTLTSPNYKNEFF---RNIFY 566
           I M+ K +   C  C+L  V      ++RQ LT PN K+  +   RNIFY
Sbjct: 741 IQMAAKMVWSMCYICVLLLVPLMAFGVNRQALTEPNVKDWHWLLVRNIFY 790


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 128  YGLLIFILLHFVPRNMSSK-SQLLLKVPPYLNVTASWNK 241
            +GL +  L +F+    S   +Q+LLKV P+L +   W K
Sbjct: 1223 FGLFLQALWNFIICGYSDGLNQMLLKVSPWLELVRQWEK 1261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,545,950
Number of Sequences: 27780
Number of extensions: 347742
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)