Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J12
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 334 FTMFPLKIVLSVVLANYGV 278
           + M  LKIVLS +L N+ V
Sbjct: 493 YAMLKLKIVLSTILRNFRV 511


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 116 PSNSHNIPRTAHLNXLQFNSFDCSSSLLIYQ 24
           P N  N P       LQF SF  +   +IY+
Sbjct: 131 PMNLENFPMDTQRCPLQFGSFGYTKRDVIYK 161


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 224 LRSGKVEPSKAIEISN 177
           L  GK++P+K + ISN
Sbjct: 254 LEDGKLKPNKKVRISN 269


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 490 DTTEDNKH*HWHASPFVDMFIVIQTLHFVGPCLLTSMYQVGY 365
           D  +  KH      P    F +IQ ++   P  + ++++ GY
Sbjct: 625 DAAQKKKHRAIRPEPIDAQFDIIQNIYIPEPQDIENIFKYGY 666


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 412 HFVGPCLLTSMYQVGY*KPQWMDLGFFTM 326
           HF  P  L S Y++   K QW D G F M
Sbjct: 351 HFFYPDPLASKYELHGLKFQWTD-GIFGM 378


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 353 LWFLIPHLIHGGKKAGPD 406
           +WFL   ++HG     PD
Sbjct: 11  VWFLSALVVHGAVAGNPD 28


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 353 LWFLIPHLIHGGKKAGPD 406
           +WFL   ++HG     PD
Sbjct: 11  VWFLSALVVHGAVAGNPD 28


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 422 PNFTFRRALPSYLHVSGGVLETTVDGFRFFYNVS 321
           P FT+R      L+VSG +       +  F  +S
Sbjct: 221 PPFTYRYGFSFLLYVSGFITTEVAGTYAIFLYIS 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,628
Number of Sequences: 438
Number of extensions: 5005
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)