Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J11
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    42   8e-05
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    29   0.64 
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    29   1.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.4  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    27   4.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   4.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.9  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   7.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   7.8  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = -2

Query: 851 EXKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPK------PLEEDDEVPNLVGNFDE 696
           E K  +E+LPGIL+ LGP+ L  L+++A  +   +         +D E+P+LV  FDE
Sbjct: 92  EEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGEKGADAQADDGEIPDLVEKFDE 149


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 570 FAHLHVKGFRSHLCLKRMIFTFISLRSWVYELHHVL 463
           + H++VK  +S  C+ +   + IS   W+ ELH +L
Sbjct: 441 YVHIYVKSSKSWRCMSQTHVSSISNLVWLNELHQLL 476


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 735 FLEWLRRGNTRRNPFQSVQAVGSELAEDT 821
           F++WL  GN+ R PF       SE  E+T
Sbjct: 126 FVDWLGMGNSSRPPFDIKGQTASEKVEET 154


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 289 VYNTYLMPI*ESIFHNAEKVDDLSKTIAF 375
           +YN++++PI +S F+  E  D  ++T+ F
Sbjct: 431 LYNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 815 LSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQ 684
           ++ LGPD  ++ K I SS      L+ +D +      FD  S Q
Sbjct: 240 ITDLGPDAPSQAKNILSSFTNSSTLKLNDHLNEKAQEFDTFSTQ 283


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 815 LSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNF-DEASKQ 684
           +S +G +  +  K++A      + +E++DE  NL G+F +E++KQ
Sbjct: 420 VSSVGKEQNHTEKQVAIETPEQQKVEKEDEHLNLQGSFIEESTKQ 464


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 340  QHCGILILK*ALDKCYKPTVEKLIQNVL 257
            +HCGI I++  L   Y P  ++L+Q V+
Sbjct: 1056 EHCGIRIIEAELFHGYNPEKKELLQEVV 1083


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 136 KKLVSKIGHD*QFFLENTLHFQKMP 210
           KKL S +    Q  LEN LHF   P
Sbjct: 610 KKLASALASQDQLVLENALHFVNPP 634


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 QKMPPLS*YIHTLNCLMSILKHF 267
           +K PPL  Y ++ NCL  I KHF
Sbjct: 871 EKKPPL--YSYSKNCLECIQKHF 891


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,066
Number of Sequences: 5004
Number of extensions: 52401
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)