Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J11
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.89 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.89 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 286 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFLEKIVSHVQFCLQV 140
           T+EK   +      N+  Y C+K+   F     Y+L +I  ++  C+ V
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI--YIPCCMLV 256


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 286 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFLEKIVSHVQFCLQV 140
           T+EK   +      N+  Y C+K+   F     Y+L +I  ++  C+ V
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI--YIPCCMLV 256


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -1

Query: 63  KKREKKEQKNVND 25
           K+++K E+KN+ND
Sbjct: 809 KEQKKSEEKNIND 821


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 758 QHSTQSFSVGSSRRVRAG*GYPG 826
           Q++  ++ +G+  RVR G  YPG
Sbjct: 349 QNNVPNWVMGNHDRVRVGTRYPG 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,331
Number of Sequences: 438
Number of extensions: 3605
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)