Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_J07
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 53 3e-08
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 44 3e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 41 2e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 39 7e-04
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 32 0.083
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 30 0.34
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 29 0.44
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 1.0
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 28 1.4
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.4
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 28 1.4
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 27 1.8
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 27 2.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.1
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 27 3.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.1
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 26 4.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.5
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 7.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 7.2
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 7.2
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 25 9.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 9.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 9.5
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 53.2 bits (122), Expect = 3e-08
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Frame = -2
Query: 567 DDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDNSGSISLDEFLIKIRPPMSES 388
D DG+ + E ++ G +E +++ ++ D D +G+I EFL + M ++
Sbjct: 24 DQDGN--ITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDT 81
Query: 387 -RRNIVEQAFKKLDKTGDGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDG 211
V +AFK DK G+G IT++++ V + S S EE D+I E+D
Sbjct: 82 DNEEEVREAFKVFDKDGNGYITVEELTHV--LTSLGERLSQEEVADMIR-------EADT 132
Query: 210 TVDGKVTLEEFMNYYS 163
DG + EEF S
Sbjct: 133 DGDGVINYEEFSRVIS 148
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 579 FRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDNSGSISLDEF 421
F+ D DG+ + EE + + G L++ E ++ + DTD G I+ +EF
Sbjct: 91 FKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Frame = -2
Query: 585 RIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEEL-FSQFDTDNSGSISLDEFLIKI 409
R+F +D+DG ++ +EF+ + + NK E + F +D D G IS E + +
Sbjct: 60 RLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVL 119
Query: 408 RPPMSESRR-----NIVEQAFKKLDKTGDGAITIDDIKGVYSVDSQT 283
+ + + R IV++ ++DK DG I+ ++ K + S + T
Sbjct: 120 KMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKDIVSGSNVT 166
Score = 42.3 bits (95), Expect = 6e-05
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Frame = -2
Query: 579 FRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDNSGSISLDEFLIKIRP- 403
F ++D + S +++ EFL I + A LFS D D G + EF+ +
Sbjct: 30 FIKIDANQSGSIDRNEFL-SIPSVA---SNPLASRLFSVVDEDGGGDVDFQEFINSLSVF 85
Query: 402 PMSESRRNIVEQAFKKLDKTGDGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANF 223
+ ++ ++ AFK D DG I+ ++ V + T + ++ + ++ K +
Sbjct: 86 SVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLRE-DQLQQIVDKTIM--- 141
Query: 222 ESDGTVDGKVTLEEFMNYYSGISVS 148
E D DGK++ EEF + SG +V+
Sbjct: 142 EVDKDRDGKISFEEFKDIVSGSNVT 166
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 40.7 bits (91), Expect = 2e-04
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Frame = -2
Query: 546 LNKEEFLYGIKETGLELNKSE-AEELFSQFDTDNSGSISLDEFLIKIRPPMSESRRNIVE 370
LNK EF K+ + S AE +F+ FD D +G I EF+ + + +
Sbjct: 43 LNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLI 102
Query: 369 QAFKKLDKTGDGAITIDD----IKGVYS-VDSQTRYKSGEETEDVIMKRFLANFESDGTV 205
AF+ D +G I+ D+ + +Y V S + E+T + + + + N D
Sbjct: 103 WAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNK-IFNM-MDKNK 160
Query: 204 DGKVTLEEF 178
DG++TLEEF
Sbjct: 161 DGQLTLEEF 169
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 38.7 bits (86), Expect = 7e-04
Identities = 26/140 (18%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Frame = -2
Query: 591 LGRIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDNSGSISLDEFL-I 415
+ F+ D D ++ E ++ G KSE ++ FD G + +++F+ +
Sbjct: 39 INEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRV 98
Query: 414 KIRPPMSESRRNIVEQAFKKLDKTGDGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRF 235
+ +++AF+ D G I++ +++ V + E +D ++
Sbjct: 99 MTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAK-------ELNENIDDQELEAM 151
Query: 234 LANFESDGTVDGKVTLEEFM 175
+ F+ D DG++ +EF+
Sbjct: 152 IEEFDLD--QDGEINEQEFI 169
Score = 37.1 bits (82), Expect = 0.002
Identities = 29/121 (23%), Positives = 53/121 (43%)
Frame = -2
Query: 501 ELNKSEAEELFSQFDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGDGAITI 322
E + + E F FD+D +I E +R + ++ V + + DKTG G + +
Sbjct: 33 EEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQM 92
Query: 321 DDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGISVSID 142
+D V + R + E++ KR F+ D T GK++L ++ +ID
Sbjct: 93 EDFVRVMTEKIVER----DPLEEI--KRAFELFDDDET--GKISLRNLRRVAKELNENID 144
Query: 141 N 139
+
Sbjct: 145 D 145
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 31.9 bits (69), Expect = 0.083
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = -2
Query: 594 GLGRIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTDNSGSISLDEFLI 415
G+ ++FR + S +LN+ EF + GL + E LF + G ++ + F
Sbjct: 488 GITKVFRHFEKKKSNMLNEVEFYAALASLGLVYDTEEGTALFHRAANSEEG-VTYERFTE 546
Query: 414 KIRPPMSESRRNIVEQAFKKLDKTGDGA--ITIDDI 313
+ + + R+ Q DG +T DD+
Sbjct: 547 IVMEELED--RDSARQVLYAFCDVADGKSYVTSDDL 580
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 29.9 bits (64), Expect = 0.34
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = -2
Query: 504 LELNKSEA--EELFSQFDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGDGA 331
L LN S EE F + D D+SG +S +EF + + ++R IV+ FK+ +G
Sbjct: 326 LHLNASMEFLEETFQKADADHSGKLSFEEFQHFV--SLLKTRSEIVD-IFKEY-TSGSDK 381
Query: 330 ITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNY 169
++++ + S + R S D I +++ +D D K+ L EF ++
Sbjct: 382 MSLEQFRHFLSTSQKARLDS-----DSIRTLYVSFCSND---DSKMGLIEFTSF 427
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = -2
Query: 534 EFLYGIKETGLELNKSEAEELFSQFDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKK 355
E+ G+ + + S LF +FD +GS+SL + + I + F+
Sbjct: 564 EWAKGLDAAAINNSSSFLRHLFLRFDKSMTGSLSLQDLVSGIAELKFRDVMRNISFIFEL 623
Query: 354 LDKTGDGAITIDDI 313
D GDG + D+
Sbjct: 624 YDFNGDGFMDKPDV 637
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 491 KVKPKNSSVNSTQTIVAQSVLMNSLLKSVLLCRNRVVT-L*NKHSRSLTRLVTVQSQL 321
K+ KN+ S + + ++ L L L + +++ L NK S TRL +QSQL
Sbjct: 765 KLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQL 822
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 297 VDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKV 193
VD T + E ED+I++ L NF T++G +
Sbjct: 55 VDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSI 89
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 336 GAITIDDIKGVYSVDSQTRYKSGEETEDV 250
G I+I D GVYS + T YKS E+ E +
Sbjct: 126 GVISIHDSTGVYSQITTTPYKSLEDYEQL 154
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 27.9 bits (59), Expect = 1.4
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 11/151 (7%)
Frame = -2
Query: 651 DPXEKLRLLCLSRGASGILGLGRIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEEL 472
D E+ + S +S + L I + GS+L E F I G+ + AE
Sbjct: 793 DNYEQAESIISSLSSSALSELSYISESSMNIGSRL--DERF---IDANGVAIRDFSAE-- 845
Query: 471 FSQFDTDNS-GSISLDEFLIKIRPPMSESRRNIVEQAFKK--------LDKTGDGAITID 319
+ +NS G +S+D FL K++ + + + F+K DK D
Sbjct: 846 LTYLTPENSKGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYKYLKIKDKKSKDVDPDD 905
Query: 318 DIKGVYSVDSQT--RYKSGEETEDVIMKRFL 232
D+ +++ T RYKS T I +R L
Sbjct: 906 DLVNQLPLNAYTKPRYKSAASTRLNIYQRIL 936
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 399 MSESRRNIVEQAFKKLDKTGDGAITIDDIK 310
++ S+ +++AF LDK GDG I +D+K
Sbjct: 42 LTSSQIQELKEAFALLDKDGDGNIGREDVK 71
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 318 DIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDG 211
D+ G+ S DS +++ G +DV+ + F NFE+ G
Sbjct: 70 DMYGMNS-DSNSQFDGGVNLDDVLAQMFGMNFEAGG 104
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = -2
Query: 501 ELNKSEAEELFSQFDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKK---LDKTGDGA 331
+L ++E E +++ D + GS+ DEF + + + N V T +
Sbjct: 853 KLTRTELEHIWNLCDHGDKGSLDRDEFAVALHLIYRKLNGNEVPAVLPPELIPPSTRNFT 912
Query: 330 ITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGT 208
+++ +K + D+ R G E + + K + S+ T
Sbjct: 913 ESLNQVKNLIKNDTSNRKPFGAENQSKLKKNSFYDNPSETT 953
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 522 HKGIL-LCSVVYFHHHPCDGKFFQVPRSLKHLET 620
H+G++ +C++VY KF + P++++ L T
Sbjct: 686 HRGLVCICNIVYSKDQEIFNKFIKTPKAVETLRT 719
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = -2
Query: 531 FLYGIKETGLELNKSEAEELFSQFDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKL 352
F+ +E+ LE E FSQ ++ + SL+ I P SRR IVEQ ++
Sbjct: 680 FILPNEESLLEKYWINYNESFSQLSRESLFT-SLESPFTDIESPTIVSRRKIVEQRKLRM 738
Query: 351 DKTGDGAITID 319
+K +D
Sbjct: 739 EKESFQETNVD 749
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 58 C*SETGKVSSQALELVRLTHH*VKVAVVVNGDADATVVVHELFKSNLPIDCSIGL 222
C + G + +ELVRL + V + V+ + A E+FK DC L
Sbjct: 462 CMDQDGSNAGYDIELVRLVKNSVNIPVIASSGAGIPQHFEEVFKET---DCDAAL 513
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 328 DCTVTSLVKLLECLFYNVTTRFRHRRTDFNKEFI 429
D TV + +E LF+N+T +H F + +
Sbjct: 699 DATVANRKDFIEFLFHNITVSSKHTAVIFTSDLL 732
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 638 NCACFACLEVLQGSWDLEEFSVAWMMMEVNY 546
N F +E + +D EEFSV W + + +
Sbjct: 41 NTTAFWFVEFTESKYDKEEFSVIWNEVSMEF 71
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 241 FHYYIFSFFAALISGLRIDRVNTFN 315
FHY F F AA+I + D +NT N
Sbjct: 495 FHYGYFVFTAAVIGHIDPDWINTGN 519
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = -2
Query: 486 EAEELFSQFDTDNSGSISLDEF-----LIKIRPPMSESRRNIVEQAFKKLDKTGDGAITI 322
E ++F D D S +++LDE I I S V+ A KLD+ G G + I
Sbjct: 396 EINDIFHILDNDYSRTVTLDEMEQFTREISIEFRSISSSLRDVDLALGKLDRVGLGVVGI 455
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 582 IFRRMDDDGSKLLNKEEFLYGIKETGL-ELNKSEAE 478
IFRR+ D S + ++ FL+ G+ E+ +EAE
Sbjct: 377 IFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAE 412
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 477 ELFSQFDTDNSGSISLDE 424
+LF QFD DN G+++ +E
Sbjct: 311 DLFYQFDRDNDGALNNEE 328
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 249 IMKRFLANFESDGTVDGKVTL 187
+ R+L F+SDG+V KV L
Sbjct: 572 VSSRYLPEFQSDGSVSEKVRL 592
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 262 FFAALISGLRIDRVNTFNVINCDCTVTSLVKLLECLFYNVTT 387
FF A+ S ++ +N+ N +CT S+ +++ YNV++
Sbjct: 577 FFHAIQSHFHLEGPIRYNM-NSNCTPNSIASIIQKKSYNVSS 617
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,806
Number of Sequences: 5004
Number of extensions: 47089
Number of successful extensions: 188
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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