Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J04
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.2  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   5.6  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   9.7  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 335  RKGKKTVKL*NLTLSISLRNILLNAR*IFKHAY 237
            RKG K +      L I+L+N+ L+   IF +AY
Sbjct: 1242 RKGSKRLDYLRERLKINLQNVRLSCEIIFSNAY 1274


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 286 HYVIYC*MLVEYLNTRIKIMYDFIE 212
           H++ +    VEYL TR+K+++   E
Sbjct: 327 HFIAFLKRFVEYLKTRMKVLHVIAE 351


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 43  IHLFTKNP*SRH*N*LPTQNYLLY*TFNNLQLIYICLT 156
           +H +T  P     + LP+Q   LY +F+N ++I   LT
Sbjct: 383 VHPYTHQPLQEALDKLPSQGIRLYSSFDNKKIINGALT 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,303
Number of Sequences: 5004
Number of extensions: 45973
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)