Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J03
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   251   9e-68
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   250   2e-67
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   214   1e-56
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    30   0.40 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    29   0.70 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   1.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.8  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.0  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   5.0  
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    26   6.6  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    26   6.6  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  251 bits (614), Expect = 9e-68
 Identities = 112/184 (60%), Positives = 145/184 (78%), Gaps = 1/184 (0%)
 Frame = -2

Query: 583 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVL 404
           I KRAE Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK RK++
Sbjct: 51  IAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIM 110

Query: 403 QLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 224
           QL RL QINNG+FV+ NKA   ML++ EPY+ +G PN K+VREL+YKRGF K++ QRIP+
Sbjct: 111 QLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPL 170

Query: 223 TSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYV 47
           + N+I+E  L K++I+ VEDLIHEI+TVG  FK A+NFLWPFKL++P GGWR +K  H++
Sbjct: 171 SDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFI 230

Query: 46  DGGD 35
           +GGD
Sbjct: 231 EGGD 234


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  250 bits (612), Expect = 2e-67
 Identities = 112/184 (60%), Positives = 145/184 (78%), Gaps = 1/184 (0%)
 Frame = -2

Query: 583 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVL 404
           I KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK RK++
Sbjct: 52  IAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIM 111

Query: 403 QLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 224
           QL RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI +
Sbjct: 112 QLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIAL 171

Query: 223 TSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYV 47
           + N+I+E  L K++I+ +EDLIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H++
Sbjct: 172 SDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFI 231

Query: 46  DGGD 35
           +GGD
Sbjct: 232 EGGD 235


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  214 bits (523), Expect = 1e-56
 Identities = 98/183 (53%), Positives = 131/183 (71%), Gaps = 1/183 (0%)
 Frame = -2

Query: 586 EIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKV 407
           E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK+RKV
Sbjct: 49  ETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKV 108

Query: 406 LQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIP 227
           L+L RL +INN VFVR NKA   MLRI EPY+ +G PNL SVREL+YKRGF K++GQRI 
Sbjct: 109 LRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIA 168

Query: 226 ITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHY 50
           ++ N+++E+ L K+++I +ED+IHEI+ VG  FK  + FLWPF L         KK  H+
Sbjct: 169 LSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHF 228

Query: 49  VDG 41
            +G
Sbjct: 229 NEG 231


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 295 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 119
           N KSV  +    G   L+G +I I+ +  ++ R+       VE +L H++  +    K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201

Query: 118 SNFLWPFK 95
           S F  PF+
Sbjct: 202 SGFFGPFR 209


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 66  LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 200
           LR P   L  L+GH   +  L +SP  +     SST   +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 53  MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 148
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 26   GYKVSAVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLN 172
            G K+ A+ I++  L       VQ +   E+ ++  LF NSED+M + L+
Sbjct: 1750 GIKIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFGNSEDVMIKQLS 1796


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 508  ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 389
            + N+G YY  G   +AFV  I G+ + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 122 VLELFSNSEDLMDEVLNTDNVVFVEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 301
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 302 S 304
           S
Sbjct: 377 S 377


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 574 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 473
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 452 DDKCQFGFPRNVVVAA-IAC 508
           D  CQ GF RN+V+ A +AC
Sbjct: 327 DRLCQLGFDRNIVIQAYLAC 346


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 744 RPRRSPSKGRKTVRSCLLYQ 685
           RPRR   + RK+VR C++ Q
Sbjct: 85  RPRRDGERKRKSVRGCIVGQ 104


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 744 RPRRSPSKGRKTVRSCLLYQ 685
           RPRR   + RK+VR C++ Q
Sbjct: 85  RPRRDGERKRKSVRGCIVGQ 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,605
Number of Sequences: 5004
Number of extensions: 64400
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)