Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_J03
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 263 9e-71
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 255 3e-68
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 161 5e-40
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 6.9
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 9.1
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 263 bits (645), Expect = 9e-71
Identities = 124/223 (55%), Positives = 158/223 (70%)
Frame = -2
Query: 703 KLPAVPESVLKHXXXXXXXXXXXXXXXXXXXXXXXXXXREIFKRAEQYVKEYRIKERDEI 524
K VPESVLK + IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 523 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 344
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 343 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 164
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+ED
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Query: 163 LIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGD 35
L+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD
Sbjct: 187 LVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGD 229
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 255 bits (624), Expect = 3e-68
Identities = 116/189 (61%), Positives = 149/189 (78%), Gaps = 6/189 (3%)
Frame = -2
Query: 583 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVL 404
IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRGIN + PK RK+L
Sbjct: 46 IFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKIL 105
Query: 403 QLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 224
QL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+
Sbjct: 106 QLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPL 165
Query: 223 TSNSIVEKR------LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKK 62
T+N ++E+ L KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK
Sbjct: 166 TNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKK 225
Query: 61 TIHYVDGGD 35
HYV+GGD
Sbjct: 226 RNHYVEGGD 234
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 161 bits (391), Expect = 5e-40
Identities = 88/238 (36%), Positives = 134/238 (56%), Gaps = 3/238 (1%)
Frame = -2
Query: 718 KEDSKKLPAVPESVLKHXXXXXXXXXXXXXXXXXXXXXXXXXXREIFKRAEQYVKEYRIK 539
+E +++LP V E+VLK + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 538 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 368
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 367 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHK 188
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L +
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180
Query: 187 HNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFVTAKTR 14
+ IIC+EDL+HEI +VG F+ ASNFL PFKL P + K + DG + T + R
Sbjct: 181 YGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGAENATWRNR 238
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 65 LAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVF---VEPLLNNAVGSD 226
L+ + W+ G ++LEL N+E + D+VL + + + LL+N +GSD
Sbjct: 1129 LSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVMPKIYSLLSNLIGSD 1185
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 317 LHCLGIPQLKECP*VSIQTWIRQAEW 240
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,046,740
Number of Sequences: 37544
Number of extensions: 415371
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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