Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J03
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    28   0.11 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   7.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   7.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 196 ASSQQCCWK*LVYVVHSAWRIHVCILTHGHSLSWG 300
           A++   CW  + Y+V  AW I    ++    L WG
Sbjct: 65  AAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWG 99


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +1

Query: 214 CWK*LVYVVHSAWRIHVCILTHGHSLSW 297
           CW  + Y++  AW +   +++    L W
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +1

Query: 214 CWK*LVYVVHSAWRIHVCILTHGHSLSW 297
           CW  + Y++  AW +   +++    L W
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPW 189


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 60  VFLRQPPVGLFNLKG 104
           +F   PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 354 FRRTNTPLFIWRSLNSCRTLRTLG 425
           F    TP+FI+ S N+   L  LG
Sbjct: 96  FMMIKTPIFIYNSFNTGFALGNLG 119


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 213 LLEVIGIRCPLSLAN 257
           ++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 50  IMNGLLAPTTSWIVQFEG 103
           I+NG   P T+W+  F G
Sbjct: 153 IVNGKRVPPTNWVGVFGG 170


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 636 DYRLR*RGVLLPSRRRGKSS 577
           DY++  + +LLP R  GKS+
Sbjct: 130 DYKIEGKVLLLPVRGAGKSN 149


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 50  IMNGLLAPTTSWIVQFEG 103
           I+NG   P T+W+  F G
Sbjct: 153 IVNGKRVPPTNWVGVFGG 170


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 175 CVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFVT 26
           C  D I+ +   G K ++       F+  N  G W  KT+  +  G FVT
Sbjct: 480 CDIDCINRVVQRGTKMQFCI-----FRTANGRG-WGVKTMKTIKKGSFVT 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,725
Number of Sequences: 438
Number of extensions: 4276
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)