Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_J02
(753 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000E47207 Cluster: PREDICTED: hypothetical protein;... 152 1e-35
UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p... 149 5e-35
UniRef50_UPI0000D56187 Cluster: PREDICTED: similar to CG3325-PA;... 148 2e-34
UniRef50_Q17A54 Cluster: Spindle-b recombination protein spn-b; ... 131 2e-29
UniRef50_O43542 Cluster: DNA-repair protein XRCC3; n=19; Euteleo... 124 2e-27
UniRef50_UPI000065EE6A Cluster: DNA-repair protein XRCC3 (X-ray ... 118 2e-25
UniRef50_Q4N299 Cluster: Putative uncharacterized protein; n=2; ... 104 2e-21
UniRef50_Q9FKM5 Cluster: DNA-repair protein XRCC3 homolog; n=18;... 98 2e-19
UniRef50_A0DFA4 Cluster: Chromosome undetermined scaffold_49, wh... 95 2e-18
UniRef50_Q8ZYR9 Cluster: DNA repair and recombination protein ra... 90 5e-17
UniRef50_UPI000023E7C1 Cluster: hypothetical protein FG00844.1; ... 90 6e-17
UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5... 90 6e-17
UniRef50_Q6C269 Cluster: Yarrowia lipolytica chromosome F of str... 88 3e-16
UniRef50_A2QR86 Cluster: Remark: alternate names = YDR004W; n=1;... 85 1e-15
UniRef50_Q1DS44 Cluster: Putative uncharacterized protein; n=1; ... 85 2e-15
UniRef50_A1CPK9 Cluster: DNA repair protein (Rad57), putative; n... 84 4e-15
UniRef50_Q8TUJ3 Cluster: DNA repair protein; n=6; Euryarchaeota|... 81 2e-14
UniRef50_A7E7I5 Cluster: Putative uncharacterized protein; n=1; ... 80 5e-14
UniRef50_A4R1B5 Cluster: Putative uncharacterized protein; n=1; ... 80 7e-14
UniRef50_Q2NHD1 Cluster: RadB; n=1; Methanosphaera stadtmanae DS... 80 7e-14
UniRef50_UPI0000DB74C1 Cluster: PREDICTED: similar to DNA-repair... 79 9e-14
UniRef50_Q0V430 Cluster: Putative uncharacterized protein; n=1; ... 79 9e-14
UniRef50_Q6FIZ6 Cluster: Similar to sp|P25301 Saccharomyces cere... 79 1e-13
UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;... 78 2e-13
UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1; Schizosa... 78 3e-13
UniRef50_UPI0000D55904 Cluster: PREDICTED: similar to Meiotic re... 77 4e-13
UniRef50_Q6L2I8 Cluster: DNA repair and recombination protein Ra... 77 4e-13
UniRef50_Q9HPF2 Cluster: DNA repair and recombination protein ra... 77 4e-13
UniRef50_Q6CMV0 Cluster: Similar to sp|P25301 Saccharomyces cere... 77 5e-13
UniRef50_Q0D0U2 Cluster: Putative uncharacterized protein; n=1; ... 77 6e-13
UniRef50_A6RPX0 Cluster: Putative uncharacterized protein; n=2; ... 77 6e-13
UniRef50_Q8TVF0 Cluster: RadA recombinase; n=1; Methanopyrus kan... 77 6e-13
UniRef50_Q93YY9 Cluster: RAD51C protein; n=1; Chlamydomonas rein... 76 8e-13
UniRef50_Q55075 Cluster: DNA repair and recombination protein ra... 76 8e-13
UniRef50_A2G1B8 Cluster: Putative uncharacterized protein; n=1; ... 76 1e-12
UniRef50_Q6YU07 Cluster: Putative XRCC3; n=2; Oryza sativa|Rep: ... 75 1e-12
UniRef50_Q54QU4 Cluster: AAA ATPase domain-containing protein; n... 75 1e-12
UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia stipitis... 66 2e-12
UniRef50_O28184 Cluster: DNA repair and recombination protein ra... 75 3e-12
UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=3... 75 3e-12
UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1; Dicty... 74 3e-12
UniRef50_A6QWV8 Cluster: Predicted protein; n=1; Ajellomyces cap... 74 4e-12
UniRef50_Q9V2F6 Cluster: DNA repair and recombination protein ra... 74 4e-12
UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to RAD51L2/RA... 73 6e-12
UniRef50_Q757K4 Cluster: AER008Wp; n=1; Eremothecium gossypii|Re... 73 6e-12
UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=4... 72 1e-11
UniRef50_UPI00006CB33C Cluster: hypothetical protein TTHERM_0045... 72 2e-11
UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1... 71 2e-11
UniRef50_P25301 Cluster: DNA repair protein RAD57; n=2; Saccharo... 71 2e-11
UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=3... 71 2e-11
UniRef50_Q18FI4 Cluster: DNA repair and recombination protein Ra... 71 3e-11
UniRef50_A5UKT8 Cluster: DNA repair protein, RadB; n=1; Methanob... 71 3e-11
UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1; ... 71 4e-11
UniRef50_Q9LQQ2 Cluster: DNA repair protein RAD51 homolog 4; n=6... 69 9e-11
UniRef50_Q69KV4 Cluster: Trad-like protein; n=3; Oryza sativa|Re... 69 2e-10
UniRef50_Q01C18 Cluster: Rad51B protein; n=2; Ostreococcus|Rep: ... 69 2e-10
UniRef50_A5DET9 Cluster: Putative uncharacterized protein; n=1; ... 69 2e-10
UniRef50_Q9HJD3 Cluster: DNA repair and recombination protein ra... 69 2e-10
UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111; Eukary... 68 2e-10
UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1 homo... 68 3e-10
UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1, put... 67 4e-10
UniRef50_A7AT31 Cluster: Putative uncharacterized protein; n=1; ... 67 4e-10
UniRef50_Q49593 Cluster: DNA repair and recombination protein ra... 67 4e-10
UniRef50_A4S5M9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 66 9e-10
UniRef50_A7ATP8 Cluster: Rad51 protein, putative; n=1; Babesia b... 65 2e-09
UniRef50_Q8PZN5 Cluster: DNA repair and recombination protein ra... 65 2e-09
UniRef50_Q2FSR3 Cluster: ATPase; n=4; Methanomicrobiales|Rep: AT... 65 2e-09
UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n... 64 3e-09
UniRef50_O93748 Cluster: DNA repair and recombination protein ra... 64 3e-09
UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=2... 64 3e-09
UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM1... 64 5e-09
UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like... 62 2e-08
UniRef50_Q9P6E6 Cluster: Related to RAD57 protein; n=2; Neurospo... 62 2e-08
UniRef50_A1RY65 Cluster: Rad51-like; n=1; Thermofilum pendens Hr... 61 3e-08
UniRef50_Q7ZTX4 Cluster: Zgc:56581; n=6; Euteleostomi|Rep: Zgc:5... 59 1e-07
UniRef50_A7DQP6 Cluster: RecA/RadA recombinase-like protein; n=1... 58 2e-07
UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;... 58 2e-07
UniRef50_O27728 Cluster: DNA repair and recombination protein ra... 58 2e-07
UniRef50_Q2GW05 Cluster: Putative uncharacterized protein; n=1; ... 58 3e-07
UniRef50_Q6BWA8 Cluster: Similar to sp|P25301 Saccharomyces cere... 57 4e-07
UniRef50_A1RYZ3 Cluster: Rad51-like; n=1; Thermofilum pendens Hr... 57 4e-07
UniRef50_Q657A2 Cluster: DNA repair protein radA (RadA)-like; n=... 57 5e-07
UniRef50_A4S2Y8 Cluster: Predicted protein; n=1; Ostreococcus lu... 56 1e-06
UniRef50_Q4SEP3 Cluster: Chromosome undetermined SCAF14615, whol... 54 4e-06
UniRef50_Q24DN8 Cluster: Putative uncharacterized protein; n=1; ... 54 5e-06
UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Re... 53 7e-06
UniRef50_Q8TWK1 Cluster: RadA recombinase; n=1; Methanopyrus kan... 53 7e-06
UniRef50_Q8SZ30 Cluster: RE19845p; n=2; Sophophora|Rep: RE19845p... 53 9e-06
UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;... 52 1e-05
UniRef50_O50248 Cluster: DNA repair and recombination protein ra... 52 1e-05
UniRef50_Q16EQ5 Cluster: Rad51A protein, putative; n=1; Aedes ae... 52 2e-05
UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1; ... 52 2e-05
UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:... 52 2e-05
UniRef50_Q4FY15 Cluster: Putative uncharacterized protein; n=3; ... 50 6e-05
UniRef50_Q99131 Cluster: REC2 protein; n=1; Ustilago maydis|Rep:... 49 1e-04
UniRef50_P47581 Cluster: Protein recA; n=2; Mycoplasma|Rep: Prot... 49 1e-04
UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodi... 48 2e-04
UniRef50_Q1JSB1 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6... 48 3e-04
UniRef50_Q3JBH0 Cluster: KaiC; n=2; Chromatiales|Rep: KaiC - Nit... 47 4e-04
UniRef50_Q4CWC1 Cluster: DNA repair protein, putative; n=3; Tryp... 47 4e-04
UniRef50_Q386Q5 Cluster: Recombinase Rad51, putative; n=1; Trypa... 47 4e-04
UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5; Gammaprot... 47 6e-04
UniRef50_Q4E2R1 Cluster: DNA recombination and repair protein RA... 47 6e-04
UniRef50_A2DYQ0 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_Q31D48 Cluster: DNA repair protein RadA; n=5; Prochloro... 46 8e-04
UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2; ... 46 8e-04
UniRef50_Q9HMM4 Cluster: DNA repair and recombination protein ra... 46 8e-04
UniRef50_Q8KD59 Cluster: DNA repair protein RadA; n=10; Chlorobi... 46 0.001
UniRef50_Q4UAC7 Cluster: Meiotic recombination (DMC1-like) prote... 46 0.001
UniRef50_Q5JET4 Cluster: DNA repair and recombination protein ra... 46 0.001
UniRef50_A2XZT8 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_O58001 Cluster: DNA repair and recombination protein ra... 45 0.002
UniRef50_Q3SA55 Cluster: ATPase RecA-superfamily; n=1; unculture... 45 0.002
UniRef50_Q8DVY2 Cluster: DNA repair protein radA; n=46; Bacteria... 44 0.003
UniRef50_Q384W8 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q7MXG3 Cluster: DNA repair protein RadA; n=33; Bacteria... 44 0.004
UniRef50_Q5K9D6 Cluster: RAD57 protein, putative; n=2; Filobasid... 44 0.004
UniRef50_Q12UA7 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 44 0.004
UniRef50_Q9PR61 Cluster: Protein recA; n=1; Ureaplasma parvum|Re... 44 0.005
UniRef50_UPI00005020FA Cluster: similar to RAD51 homolog protein... 43 0.007
UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep: R... 43 0.007
UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter deh... 43 0.007
UniRef50_Q8F261 Cluster: DNA repair protein radA-like protein; n... 43 0.009
UniRef50_P24517 Cluster: DNA repair protein radA; n=195; Bacteri... 43 0.009
UniRef50_P37572 Cluster: DNA repair protein radA homolog; n=50; ... 43 0.009
UniRef50_A3KGH9 Cluster: RAD51 homolog; n=13; Eukaryota|Rep: RAD... 42 0.012
UniRef50_Q05FN0 Cluster: Protein recA; n=1; Candidatus Carsonell... 42 0.012
UniRef50_O29797 Cluster: Putative uncharacterized protein; n=1; ... 42 0.012
UniRef50_UPI0000E46317 Cluster: PREDICTED: similar to Trad; n=1;... 42 0.016
UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome sh... 42 0.016
UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9; Clostridi... 42 0.016
UniRef50_Q7UMQ5 Cluster: Putative uncharacterized protein; n=3; ... 42 0.016
UniRef50_A3FQA6 Cluster: Putative uncharacterized protein; n=2; ... 42 0.016
UniRef50_Q0W7M6 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo sapie... 42 0.022
UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein k... 42 0.022
UniRef50_Q4CYK4 Cluster: DNA repair protein, putative; n=2; Tryp... 42 0.022
UniRef50_Q5JDP8 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 42 0.022
UniRef50_Q4Q3T8 Cluster: Recombinase Rad51, putative; n=3; Leish... 41 0.029
UniRef50_A0B9F0 Cluster: Putative circadian clock protein, KaiC;... 41 0.029
UniRef50_Q7U4K5 Cluster: Protein recA; n=10; cellular organisms|... 41 0.029
UniRef50_UPI0000D56C94 Cluster: PREDICTED: similar to RAD51 homo... 41 0.038
UniRef50_Q1ZXF0 Cluster: Putative DNA repair protein; n=1; Dicty... 41 0.038
UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomy... 41 0.038
UniRef50_Q5XDZ7 Cluster: DNA repair protein radA homolog; n=54; ... 41 0.038
UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-leng... 40 0.050
UniRef50_Q8G3Y2 Cluster: DNA repair protein radA; n=4; Bifidobac... 40 0.050
UniRef50_Q89T73 Cluster: Protein recA; n=9; Bacteria|Rep: Protei... 40 0.050
UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7; Proteobac... 40 0.050
UniRef50_A3EUB1 Cluster: DNA repair protein radA; n=1; Leptospir... 40 0.050
UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1; Syntropho... 40 0.066
UniRef50_Q08YR0 Cluster: Putative uncharacterized protein; n=1; ... 40 0.066
UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella ve... 40 0.066
UniRef50_Q18BZ3 Cluster: ABC transporter, ATP-binding/permease p... 40 0.087
UniRef50_Q02AB2 Cluster: RecA domain protein; n=1; Solibacter us... 40 0.087
UniRef50_Q30L73 Cluster: Gp72; n=1; Listeria phage P100|Rep: Gp7... 40 0.087
UniRef50_P38953 Cluster: DNA repair protein RAD55; n=2; Saccharo... 40 0.087
UniRef50_A5KL93 Cluster: Putative uncharacterized protein; n=2; ... 39 0.12
UniRef50_A0MN30 Cluster: RecA/RadA recombinase; n=1; Thermus pha... 39 0.12
UniRef50_Q580V2 Cluster: DNA repair protein, putative; n=1; Tryp... 39 0.12
UniRef50_Q8ZXQ7 Cluster: Putative uncharacterized protein PAE115... 39 0.12
UniRef50_Q0W872 Cluster: Predicted RecA-family ATPase; n=2; Eury... 39 0.12
UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in s... 39 0.12
UniRef50_A0RYZ3 Cluster: RecA/RadA recombinase related protein; ... 39 0.12
UniRef50_Q9PK96 Cluster: DNA repair protein radA homolog; n=9; C... 39 0.12
UniRef50_A0L497 Cluster: DNA repair protein RadA; n=6; Bacteria|... 39 0.15
UniRef50_Q948V7 Cluster: Chloroplast DNA recombination protein R... 39 0.15
UniRef50_Q00XV2 Cluster: RAD51-like protein 2; n=2; Ostreococcus... 39 0.15
UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 39 0.15
UniRef50_Q2FNQ2 Cluster: Putative circadian clock protein, KaiC;... 39 0.15
UniRef50_Q0W7M8 Cluster: Putative uncharacterized protein; n=1; ... 39 0.15
UniRef50_O14129 Cluster: DNA repair protein rhp55; n=1; Schizosa... 39 0.15
UniRef50_Q7NHX9 Cluster: DNA repair protein radA; n=23; Bacteria... 38 0.20
UniRef50_Q3ADP9 Cluster: Conserved domain protein; n=1; Carboxyd... 38 0.20
UniRef50_A0XYW8 Cluster: DNA repair protein radA; n=9; Proteobac... 38 0.20
UniRef50_O58563 Cluster: Putative uncharacterized protein PH0833... 38 0.20
UniRef50_O29483 Cluster: Putative uncharacterized protein; n=1; ... 38 0.20
UniRef50_Q4UL56 Cluster: DNA repair protein radA homolog; n=18; ... 38 0.20
UniRef50_UPI0000585DAC Cluster: PREDICTED: similar to RAD51-like... 38 0.27
UniRef50_Q3F0X4 Cluster: RecA protein; n=1; Bacillus thuringiens... 38 0.27
UniRef50_A5HL42 Cluster: DNA primase/helicase; n=1; Phormidium p... 38 0.27
UniRef50_Q04761 Cluster: Protein recA; n=310; Bacteria|Rep: Prot... 38 0.27
UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79; Proteoba... 38 0.35
UniRef50_Q17EK1 Cluster: Putative uncharacterized protein; n=1; ... 38 0.35
UniRef50_O27166 Cluster: Conserved protein; n=1; Methanothermoba... 38 0.35
UniRef50_P0ADK3 Cluster: Uncharacterized protein yiaF; n=26; Ent... 38 0.35
UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4; Deinococc... 37 0.46
UniRef50_Q5JQE4 Cluster: OSJNBa0096F01.14 protein; n=6; Oryza sa... 37 0.46
UniRef50_A7KV38 Cluster: RecA; n=1; Bacillus phage 0305phi8-36|R... 37 0.46
UniRef50_Q74ZR1 Cluster: AGR137Wp; n=1; Eremothecium gossypii|Re... 37 0.46
UniRef50_Q6CPZ2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 37 0.46
UniRef50_Q3IN66 Cluster: Probable KaiC-like transcriptional regu... 37 0.46
UniRef50_O66827 Cluster: DNA repair protein radA homolog; n=1; A... 37 0.46
UniRef50_UPI00015BAB16 Cluster: putative circadian clock protein... 37 0.61
UniRef50_Q3VLT2 Cluster: Gas vesicle synthesis GvpLGvpF; n=1; Pe... 37 0.61
UniRef50_Q0AB05 Cluster: Putative circadian clock protein, KaiC;... 37 0.61
UniRef50_A6G4M7 Cluster: DNA repair protein radA; n=1; Plesiocys... 37 0.61
UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.61
UniRef50_Q6FM82 Cluster: Similar to sp|P38953 Saccharomyces cere... 37 0.61
UniRef50_Q0W053 Cluster: Putative ATPase; n=1; uncultured methan... 37 0.61
UniRef50_P65954 Cluster: DNA repair protein radA homolog; n=43; ... 37 0.61
UniRef50_P74646 Cluster: Circadian clock protein kinase kaiC; n=... 37 0.61
UniRef50_A5FSU6 Cluster: DNA repair protein RadA; n=5; Chlorofle... 36 0.81
UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Re... 36 0.81
UniRef50_Q8ZT96 Cluster: Putative uncharacterized protein PAE336... 36 0.81
UniRef50_O29893 Cluster: Putative uncharacterized protein; n=1; ... 36 0.81
UniRef50_A7IAV9 Cluster: HTR-like protein; n=1; Candidatus Metha... 36 0.81
UniRef50_A7D6B3 Cluster: KaiC domain protein; n=6; cellular orga... 36 0.81
UniRef50_Q39199 Cluster: DNA repair protein recA homolog 1, chlo... 36 0.81
UniRef50_Q17VK6 Cluster: Putative uncharacterized protein Hac pr... 36 1.1
UniRef50_A4M8G8 Cluster: AAA ATPase; n=1; Petrotoga mobilis SJ95... 36 1.1
UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage Ma-LM... 36 1.1
UniRef50_Q7R451 Cluster: GLP_254_31158_29860; n=1; Giardia lambl... 36 1.1
UniRef50_P43705 Cluster: Protein recA; n=176; root|Rep: Protein ... 36 1.1
UniRef50_Q48N05 Cluster: Circadian oscillation regulator KaiC ho... 36 1.4
UniRef50_A6W1I1 Cluster: DNA repair protein RadA; n=66; Proteoba... 36 1.4
UniRef50_A6NUV1 Cluster: DNA repair protein radA; n=1; Bacteroid... 36 1.4
UniRef50_A5NQF2 Cluster: KaiC domain protein; n=1; Methylobacter... 36 1.4
UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3; Cyanobact... 36 1.4
UniRef50_A7L3L0 Cluster: Replicative DNA helicase; n=1; Enteroco... 36 1.4
UniRef50_A7TGZ2 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q8ZYK9 Cluster: Putative uncharacterized protein PAE072... 36 1.4
UniRef50_Q3IML2 Cluster: Probable KaiC-like transcriptional regu... 36 1.4
UniRef50_P53756 Cluster: Probable ATP-dependent transporter YNR0... 36 1.4
UniRef50_UPI000038E425 Cluster: hypothetical protein Faci_030018... 35 1.9
UniRef50_Q7D3Y2 Cluster: AGR_pAT_129p; n=4; Rhizobiaceae|Rep: AG... 35 1.9
UniRef50_Q1IJA5 Cluster: Protein recA; n=1; Acidobacteria bacter... 35 1.9
UniRef50_A7HJZ5 Cluster: DNA repair protein RadA; n=2; Thermotog... 35 1.9
UniRef50_Q2USE9 Cluster: Predicted protein; n=6; Trichocomaceae|... 35 1.9
UniRef50_Q9UXG4 Cluster: Putative uncharacterized protein ORF-c4... 35 1.9
UniRef50_Q8RY99 Cluster: DNA repair protein recA homolog 2, mito... 35 1.9
UniRef50_P74391 Cluster: DNA repair protein radA homolog; n=8; C... 35 1.9
UniRef50_P73860 Cluster: KaiC-like protein 1; n=17; cellular org... 35 1.9
UniRef50_Q5PBN4 Cluster: DNA repair protein radA; n=7; Anaplasma... 35 2.5
UniRef50_Q4LDC0 Cluster: Protein recA; n=4; cellular organisms|R... 35 2.5
UniRef50_Q1CXY6 Cluster: Putative uncharacterized protein; n=2; ... 35 2.5
UniRef50_A5IP72 Cluster: ABC transporter related; n=7; Staphyloc... 35 2.5
UniRef50_A3ZNU6 Cluster: RecA protein; n=1; Blastopirellula mari... 35 2.5
UniRef50_Q4CZQ5 Cluster: DNA repair protein, putative; n=2; Tryp... 35 2.5
UniRef50_A3LR58 Cluster: ATP-dependent ABC transporter; n=4; Sac... 35 2.5
UniRef50_Q4JB87 Cluster: Conserved protein; n=7; Thermoprotei|Re... 35 2.5
UniRef50_Q1DEE6 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in s... 34 3.3
UniRef50_A4VM13 Cluster: RecA-superfamily ATPase implicated in s... 34 3.3
UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 - B... 34 3.3
UniRef50_Q389E0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_Q0W7M9 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_Q8EVC7 Cluster: Protein recA; n=2; Mycoplasma|Rep: Prot... 34 3.3
UniRef50_UPI00006CB775 Cluster: hypothetical protein TTHERM_0034... 34 4.3
UniRef50_Q2CB22 Cluster: Protein recA; n=5; Proteobacteria|Rep: ... 34 4.3
UniRef50_Q034K4 Cluster: Protein recA; n=5; Bacteria|Rep: Protei... 34 4.3
UniRef50_Q5YEV2 Cluster: Guanine nucleotide binding-protein G(0)... 34 4.3
UniRef50_Q54FZ7 Cluster: Putative uncharacterized protein; n=4; ... 34 4.3
UniRef50_Q8PXX7 Cluster: Putative DNA integration/recombination/... 34 4.3
UniRef50_Q12XV7 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 34 4.3
UniRef50_Q0W7N5 Cluster: Predicted ATPase; n=1; uncultured metha... 34 4.3
UniRef50_A1RXK0 Cluster: Putative circadian clock protein, KaiC;... 34 4.3
UniRef50_Q8G4G9 Cluster: Protein recA; n=1571; root|Rep: Protein... 34 4.3
UniRef50_Q9ZUP2 Cluster: DNA repair protein recA homolog 3; n=11... 34 4.3
UniRef50_P75539 Cluster: Replicative DNA helicase; n=4; Mycoplas... 34 4.3
UniRef50_UPI0000DAF8E1 Cluster: 3-dehydroquinate dehydratase (3-... 33 5.7
UniRef50_Q833J1 Cluster: Conserved domain protein; n=1; Enteroco... 33 5.7
UniRef50_Q67LV6 Cluster: Protein recA; n=1; Symbiobacterium ther... 33 5.7
UniRef50_Q1QT32 Cluster: Putative circadian clock protein, KaiC;... 33 5.7
UniRef50_Q097S5 Cluster: Putative uncharacterized protein; n=1; ... 33 5.7
UniRef50_A0VKZ0 Cluster: DnaB-like helicase-like; n=1; Delftia a... 33 5.7
UniRef50_Q8I1P4 Cluster: Putative uncharacterized protein PFD093... 33 5.7
UniRef50_A2DPH2 Cluster: Clan CA, family C19, ubiquitin hydrolas... 33 5.7
UniRef50_A0BPI5 Cluster: Chromosome undetermined scaffold_12, wh... 33 5.7
UniRef50_Q9V040 Cluster: RecA family AAA ATPase; n=5; Thermococc... 33 5.7
UniRef50_UPI00006CCC02 Cluster: C2 domain containing protein; n=... 33 7.6
UniRef50_UPI000050F9DD Cluster: COG3638: ABC-type phosphate/phos... 33 7.6
UniRef50_Q4JXK0 Cluster: DNA repair protein RadA; n=1; Corynebac... 33 7.6
UniRef50_Q3E4W4 Cluster: ABC transporter related; n=2; Bacteria|... 33 7.6
UniRef50_Q5ULN8 Cluster: Orf76; n=1; Lactobacillus phage LP65|Re... 33 7.6
UniRef50_Q55GF4 Cluster: ABC transporter G family protein; n=2; ... 33 7.6
UniRef50_A3LS69 Cluster: Predicted protein; n=1; Pichia stipitis... 33 7.6
UniRef50_P0A451 Cluster: Protein recA; n=334; root|Rep: Protein ... 33 7.6
UniRef50_UPI00015BDD71 Cluster: UPI00015BDD71 related cluster; n... 33 10.0
UniRef50_UPI000067400A Cluster: hypothetical protein Bpse4_03000... 33 10.0
UniRef50_Q5ZWH0 Cluster: DNA integration/recombination/inversion... 33 10.0
UniRef50_Q1N9P1 Cluster: Putative uncharacterized protein; n=2; ... 33 10.0
UniRef50_A7HWA3 Cluster: Fatty acid desaturase; n=1; Parvibaculu... 33 10.0
UniRef50_A0Q1V0 Cluster: Mismatch repair protein MutS-like prote... 33 10.0
UniRef50_Q54C68 Cluster: Putative uncharacterized protein; n=1; ... 33 10.0
UniRef50_Q24BZ5 Cluster: Putative uncharacterized protein; n=1; ... 33 10.0
UniRef50_A5K641 Cluster: Putative uncharacterized protein; n=2; ... 33 10.0
UniRef50_Q8TN47 Cluster: Putative uncharacterized protein; n=3; ... 33 10.0
UniRef50_Q8PZS8 Cluster: Flagella related protein FlaH; n=3; Met... 33 10.0
UniRef50_Q5V5J9 Cluster: RecA/helicase-like; n=1; Haloarcula mar... 33 10.0
UniRef50_Q5V0B5 Cluster: Circadian regulator; n=1; Haloarcula ma... 33 10.0
UniRef50_Q2FNQ1 Cluster: HTR-like protein; n=1; Methanospirillum... 33 10.0
UniRef50_P35901 Cluster: Protein recA (Recombinase A) [Contains:... 33 10.0
>UniRef50_UPI0000E47207 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 355
Score = 152 bits (368), Expect = 1e-35
Identities = 95/269 (35%), Positives = 144/269 (53%), Gaps = 33/269 (12%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYIC 555
++TGC +D+ L GG I EI G+S +GKTQL L + L VYIC
Sbjct: 81 LTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQGGLANGVVYIC 140
Query: 554 TEDLFPAKRFNQIMNSIKSR-------DQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQ 396
TED+FP+KR Q+++S R G +++VEH +E L C+ +LP LL +
Sbjct: 141 TEDVFPSKRLQQLISSFNRRIGPALAKQLAVGDHIYVEHAAEKDQLWHCLEKRLPLLLSR 200
Query: 395 NIVSLIVIDSIAAPFR--VESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFA 222
+V L V+DS+AA FR E D ++RA EL+ + L L+ Q+N+A+VC+NQVTA+
Sbjct: 201 GMVKLAVVDSLAAIFRSEFELRDTIRRARELQRVGAHLHRLSSQFNVAVVCVNQVTANME 260
Query: 221 DS-----DSIHPALGLAWSNMVSTRLRISKTTQSVIIDD-----------SGVCKSDSGG 90
S + PALGL WSN+V RL +S+T + D +G C +S
Sbjct: 261 ASLDPTESEMMPALGLTWSNIVKVRLMLSRTPYRLPPSDTTNNRTDRGSVNGECSHESEQ 320
Query: 89 QNKLFAREISVVFAPDLANSSTLFTITSN 3
+ ++ R+I ++FAP L + + ++
Sbjct: 321 KAEIPVRQIEILFAPHLPKEVCYYIVDAD 349
>UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p -
Drosophila melanogaster (Fruit fly)
Length = 341
Score = 149 bits (362), Expect = 5e-35
Identities = 93/252 (36%), Positives = 146/252 (57%), Gaps = 12/252 (4%)
Frame = -2
Query: 725 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI--------HNLPKC 570
V+ ++S GCS +D GGG T I E+ G +G GKT+L+L S+ L K
Sbjct: 83 VRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKG 142
Query: 569 SVYICTEDLFPAKRFNQIMNSIKSR----DQDYGKNVFVEHISEAKDLQFCIRMQLPKLL 402
YICTE FPA+R Q+ + + R + ++ N+FVE+ EA+ L C+ ++P+L+
Sbjct: 143 VAYICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLM 202
Query: 401 QQNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFA 222
QQ+ + LI+IDS+AA FR+ + DY++RA +R LA L++ A +YN A+VC+NQV A+
Sbjct: 203 QQHGIGLIIIDSVAAIFRLYN-DYLERARHMRRLADALLSYADKYNCAVVCVNQV-ATRD 260
Query: 221 DSDSIHPALGLAWSNMVSTRLRISKTTQSVIIDDSGVCKSDSGGQNKLFAREISVVFAPD 42
D I P LGL W+++ TRLR+S+ V K G + R++ ++++P+
Sbjct: 261 GQDEI-PCLGLQWAHLGRTRLRVSR-----------VPKQHRMGDQLITVRKLEILYSPE 308
Query: 41 LANSSTLFTITS 6
N F IT+
Sbjct: 309 TPNDFAEFLITA 320
>UniRef50_UPI0000D56187 Cluster: PREDICTED: similar to CG3325-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG3325-PA - Tribolium castaneum
Length = 274
Score = 148 bits (358), Expect = 2e-34
Identities = 98/249 (39%), Positives = 134/249 (53%), Gaps = 14/249 (5%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYI 558
+ISTGCS ID I GG I+EI G +G GKTQL L S+ L K VY+
Sbjct: 38 RISTGCSAIDAITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVVYL 97
Query: 557 CTEDLFPAKRFNQ--IMNSIKSRDQ--DYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNI 390
CTED FP KR I S+K D ++ N+F+EH+++ + L+ C+ L KLL
Sbjct: 98 CTEDAFPIKRLKDLAITYSLKYHDLGINFEDNIFIEHLADVEQLKKCLSNSLTKLLLVKN 157
Query: 389 VSLIVIDSIAAPFRVESTD--YVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADS 216
V L+VIDSIA FR E+ D Y R + + +L LA++Y A+VC+NQVT + +
Sbjct: 158 VGLVVIDSIAGIFRSETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQVTDN-PTT 216
Query: 215 DSIHPALGLAWSNMVSTRLRISKTTQSVIIDDSGVCKSDSGGQNKLFAREISVVFAPDLA 36
+ P LGLAWSN ++ R I++ + + RE VVFAPDL+
Sbjct: 217 NVTEPCLGLAWSNCLTYRFNINRFVNTKV-------------------REFEVVFAPDLS 257
Query: 35 NSSTLFTIT 9
N + FTIT
Sbjct: 258 NQTCKFTIT 266
>UniRef50_Q17A54 Cluster: Spindle-b recombination protein spn-b;
n=1; Aedes aegypti|Rep: Spindle-b recombination protein
spn-b - Aedes aegypti (Yellowfever mosquito)
Length = 266
Score = 131 bits (317), Expect = 2e-29
Identities = 76/208 (36%), Positives = 117/208 (56%), Gaps = 15/208 (7%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS-----VYICTE 549
KI G +D + GGG + I EI G+ GSGKTQ+ L+ ++ +C VYI TE
Sbjct: 29 KIKLGVDALDQLTGGGISSRGIVEIAGDPGSGKTQMCLHLALACQMQCETRKGVVYISTE 88
Query: 548 DLFPAKRFNQIMNSIKSR------DQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIV 387
FP+KR Q+ +K + N+FVEH++ A L+ C+ +LP LL+ N +
Sbjct: 89 HPFPSKRLVQMEQVMKRNLRITEDSMKFTDNIFVEHLNTAVALEECVNQRLPILLENNPI 148
Query: 386 SLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQ----VTASFAD 219
SL++IDSI A + E ++V RA R + L +L +++ ++C NQ V +S D
Sbjct: 149 SLLIIDSITAAY-TEEQNFVDRAHSFRRVVNALHSLQDKFDFGVLCTNQVRSVVDSSTLD 207
Query: 218 SDSIHPALGLAWSNMVSTRLRISKTTQS 135
+ I PA+GLAW ++V TR ++S+T S
Sbjct: 208 DERIVPAMGLAWGSLVHTRFQLSRTPGS 235
>UniRef50_O43542 Cluster: DNA-repair protein XRCC3; n=19;
Euteleostomi|Rep: DNA-repair protein XRCC3 - Homo
sapiens (Human)
Length = 346
Score = 124 bits (300), Expect = 2e-27
Identities = 85/256 (33%), Positives = 126/256 (49%), Gaps = 20/256 (7%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HN-LPKCSVYI 558
++S GC +D +L GG I E+ G S +GKTQL L + H L +VYI
Sbjct: 81 RLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYI 140
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQD----------YGKNVFVEHISEAKDLQFCIRMQLPK 408
CTED FP KR Q+M D +G +F+EH+++ L C+ ++P
Sbjct: 141 CTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPV 200
Query: 407 LLQQNIVSLIVIDSIAAPFRVE--STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
LL + + L+VIDS+AAPFR E S RA L+ L L L+ + ++CINQVT
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVT 260
Query: 233 ASFADSDSIHPALGLAWSNMVSTRLRISKTTQSVIIDDSGVCKSDSGGQNKLFAREISVV 54
+ + + H LG W VS L I+ Q ++ + + + AR + V+
Sbjct: 261 EAMEEQGAAHGPLGF-WDERVSPALGITWANQLLVRLLADRLREEEAALG-CPARTLRVL 318
Query: 53 FAPDLANSSTLFTITS 6
AP L SS +TI++
Sbjct: 319 SAPHLPPSSCSYTISA 334
>UniRef50_UPI000065EE6A Cluster: DNA-repair protein XRCC3 (X-ray
repair cross-complementing protein 3).; n=1; Takifugu
rubripes|Rep: DNA-repair protein XRCC3 (X-ray repair
cross-complementing protein 3). - Takifugu rubripes
Length = 346
Score = 118 bits (283), Expect = 2e-25
Identities = 82/261 (31%), Positives = 130/261 (49%), Gaps = 35/261 (13%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY--------TSIHNLPKCSVYI 558
++ GC I+++L GG G I E+ G+SG+GKTQL L T L +VYI
Sbjct: 81 RLGVGCVVINELLRGGLPVGRITELSGQSGAGKTQLALQLCLCVQYPTDYGGLDSGAVYI 140
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQD----------YGKNVFVEHISEAKDLQFCIRMQLPK 408
CTE+ FP +R Q++ D + +V+VEH ++ LQ C+ ++P
Sbjct: 141 CTENSFPIRRLQQLVTDQYVMRSDVPPSLISTLKFSDHVYVEHTADLDSLQVCLSRRVPL 200
Query: 407 LLQQNIVSLIVIDSIAAPFRVE--STDYVQRAGELRELAIMLITLAQQYNIAIVCINQV- 237
LL + + L+V+DS+AA FR E + ++ +R ++ ++ L L+Q+++ ++CINQV
Sbjct: 201 LLARGLARLVVLDSLAALFRCEFQAAEWQERTRQMLNVSSTLHRLSQEFSTTVLCINQVI 260
Query: 236 TASFAD--------------SDSIHPALGLAWSNMVSTRLRISKTTQSVIIDDSGVCKSD 99
SF S S+ PALGL W+N V RL + ++ ++
Sbjct: 261 PLSFRSHFPLRKSQTLLHPLSSSVSPALGLTWANQVCVRLMMLRSHSTI----------- 309
Query: 98 SGGQNKLFAREISVVFAPDLA 36
S G R + VVF P LA
Sbjct: 310 SRGNQHSALRRLEVVFGPHLA 330
>UniRef50_Q4N299 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 286
Score = 104 bits (250), Expect = 2e-21
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 30/215 (13%)
Frame = -2
Query: 701 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL-YTS-------IHNLPKCSVYICTED 546
G +ID L GG G + EI+G SGSGKTQ L TS IH+ +YI T
Sbjct: 31 GVKEIDQALNGGLLLGKVCEIYGPSGSGKTQFALSLTSEVLINNLIHSKDYVVLYIYTNG 90
Query: 545 LFPAKRFNQIMNS-------IKSRDQDYG-----KNVFVEHISEAKDLQFCIRMQLPKLL 402
FP +R N+I+ S + D+++ KN++VE +++ +L F +L ++L
Sbjct: 91 TFPIERLNEILRSKYEDAKGLIKADENFNTSQLLKNLYVEKVTDNDELYFTFTSKLEEML 150
Query: 401 QQNIVSLIVIDSIAAPFR-VESTDY-VQRAGELRELAIMLITLAQQYNIAIVCINQVTAS 228
Q N V LIVIDSIAA FR V++ Y QR + ++ +++ ++ +YN+ I+ INQ +
Sbjct: 151 QHN-VKLIVIDSIAALFRTVQNESYHGQRINSITKVGLIMKRISHEYNLLILAINQASGV 209
Query: 227 FADSD--------SIHPALGLAWSNMVSTRLRISK 147
F S+ I PALG AW +++R+ +++
Sbjct: 210 FNLSNIPFLNPRSGIKPALGEAWERCINSRILVTR 244
>UniRef50_Q9FKM5 Cluster: DNA-repair protein XRCC3 homolog; n=18;
core eudicotyledons|Rep: DNA-repair protein XRCC3
homolog - Arabidopsis thaliana (Mouse-ear cress)
Length = 304
Score = 97.9 bits (233), Expect = 2e-19
Identities = 87/279 (31%), Positives = 139/279 (49%), Gaps = 42/279 (15%)
Frame = -2
Query: 719 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------H-NLPKCSV 564
N K++TGC +D L GG ++ EI ESG GKTQL L S+ H L S+
Sbjct: 18 NRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSL 77
Query: 563 YICTEDLFPAKRFNQIMNSIKSRD----QDYGKN----VFVEHISEAKDLQFCIRMQLPK 408
Y+ +E FP +R +Q+ ++ + +Y N VFV+++ L F I ++
Sbjct: 78 YLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL-FDIMPRIDG 136
Query: 407 LLQQN----IVSLIVIDSIAAPFRVE----STDYVQRAGELRELAIMLITLAQQYNIAIV 252
+ + + LIV+DS+AA FR E +D +R+ +++ L LA ++++AIV
Sbjct: 137 FVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIV 196
Query: 251 CINQVTASFADSDSIH------------------PALGLAWSNMVSTRLRISKTTQSVII 126
NQVT SD + P+LGLAW+N V++R IS++ S++
Sbjct: 197 ITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFISRSDGSIVK 256
Query: 125 DDSGVCKSDSGGQNKLFAREISVVFAPDLANSSTLFTIT 9
D S ++ S ++ R + +VF+P L SS F IT
Sbjct: 257 DRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMIT 295
>UniRef50_A0DFA4 Cluster: Chromosome undetermined scaffold_49, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_49,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 256
Score = 95.1 bits (226), Expect = 2e-18
Identities = 59/192 (30%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Frame = -2
Query: 680 ILGGGFRTGTINEIFGESGSGKTQ----LVLYTSIHNLPKCSVYICTEDLFPAKRFNQIM 513
++ GG +TG + E++GE+G GKT L++ T I+ +YI T RFNQ++
Sbjct: 32 LISGGIQTGILTELYGEAGCGKTHVCMTLMINTIINYKTSRVIYISTAKQLQQDRFNQLL 91
Query: 512 NSIK----SRDQDYGKNVF----VEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
I +++ + N+F ++H++ K + I QLP LL+Q LI+ID+I
Sbjct: 92 CKISYVIGNQNIAWFTNLFNKCIIQHLNNTKFMDEYIYEQLPTLLEQYQFKLIIIDNITT 151
Query: 356 PFR-VEST-DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIHPALGLAW 183
+ ++ T + +Q+ L++ + LA+++NIA+V +N V +S ++ ++PALG+ W
Sbjct: 152 YLQELQLTLNQMQKTSILKKFSNHFRKLAKKHNIAVVFVNNVVSS-TQNNKLYPALGIKW 210
Query: 182 SNMVSTRLRISK 147
S M+ R+++ K
Sbjct: 211 SEMIDERIQVEK 222
>UniRef50_Q8ZYR9 Cluster: DNA repair and recombination protein radA;
n=19; Archaea|Rep: DNA repair and recombination protein
radA - Pyrobaculum aerophilum
Length = 333
Score = 90.2 bits (214), Expect = 5e-17
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 14/210 (6%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-------CSVYI 558
+ISTG +D++LGGG T + EI GE GSGKTQL ++ LP+ ++YI
Sbjct: 101 RISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYI 160
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQDYG-KNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
TE+ F +R QI + + D D N+F + + D Q + Q +++Q+ V+L
Sbjct: 161 DTENTFRPERIMQIAKA-RGLDSDQALHNIFYAR-AYSSDHQMILVEQAKSIIKQHNVAL 218
Query: 380 IVIDSIAAPFRVE---STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA--SFADS 216
+V+DS+ A FR E + +R +L + L+ LA Y++A+V NQV A
Sbjct: 219 LVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFG 278
Query: 215 DSIHPALGLAWSNMVSTRLRISKTTQSVII 126
+ + PA G ++ + RL + K+ +++ I
Sbjct: 279 NPLRPAGGNILAHGATYRLWLRKSKENIRI 308
>UniRef50_UPI000023E7C1 Cluster: hypothetical protein FG00844.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00844.1 - Gibberella zeae PH-1
Length = 445
Score = 89.8 bits (213), Expect = 6e-17
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 20/192 (10%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL-------YTSIHNLPKCSV 564
+N IST +D ILGGG G + E GESG+GKTQ +L S H L + ++
Sbjct: 85 ENNVISTLDDGLDAILGGGVPVGAVTEFTGESGAGKTQALLSLCLAVQLPSPHGLGREAL 144
Query: 563 YICTEDLFPAKRFNQIMNS---IKSRDQDYGKNVFVEHISEAKDLQ---FCIRMQLPKLL 402
YI TE R Q++ S I+ D D ++ H + DL+ + Q+P LL
Sbjct: 145 YISTEATMATSRLAQMLKSNPIIQQYDVDDRPSLDAIHSTITPDLETQDHILDFQVPVLL 204
Query: 401 QQNIVSLIVIDSIAAPFRVE-------STDYVQRAGELRELAIMLITLAQQYNIAIVCIN 243
++ + LI++DS+AA +R E ++ R+ EL L +L LA+++N+A+V N
Sbjct: 205 SRHRIGLIILDSVAANYRAEFERQGTHGSNMAARSAELVRLGALLRDLARRHNVAVVVAN 264
Query: 242 QVTASFADSDSI 207
QV F+ S ++
Sbjct: 265 QVADRFSSSSAL 276
>UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5;
Magnoliophyta|Rep: DNA repair protein RAD51 homolog 3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 363
Score = 89.8 bits (213), Expect = 6e-17
Identities = 65/215 (30%), Positives = 112/215 (52%), Gaps = 30/215 (13%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-C------SVYI 558
+I+T CS +D+ILGGG + EI G G GKTQ+ + S++ +P+ C ++YI
Sbjct: 104 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 163
Query: 557 CTEDLFPAKRFNQI--------------------MNSIKSRDQDYGKNVFVEHISEAKDL 438
TE F +R QI N ++ + +D +N+F + +
Sbjct: 164 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTE- 222
Query: 437 QFCIRMQLPKLLQQN-IVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNI 261
Q + L K + +N V ++++DSI FR + D QR L E+A+ + LA+++++
Sbjct: 223 QIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSL 282
Query: 260 AIVCINQVTASFAD-SDSIHPALGLAWSNMVSTRL 159
A+V +NQVT F++ S + ALG +WS+ + R+
Sbjct: 283 AVVLLNQVTTKFSEGSFQLALALGDSWSHSCTNRV 317
>UniRef50_Q6C269 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 421
Score = 87.8 bits (208), Expect = 3e-16
Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 17/177 (9%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYIC 555
ISTG KID ++ GGF TGT+ E+ GES +GK+ +L ++ L K +V+I
Sbjct: 91 ISTGVRKIDTVMNGGFPTGTLCEVAGESAAGKSHFLLQLCVNVQLARGEGGLGKKAVFIS 150
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHIS--EAKDLQFCIRM---QLPKLLQQNI 390
TE +R Q+M+ + D N+ + H+S KDL+ R+ LP LL+ +
Sbjct: 151 TESGLETRRLVQMMDHVIKLGHD---NISLHHVSFIACKDLEQQDRVFQYNLPNLLEDSS 207
Query: 389 VSLIVIDSIAAPFRVEST----DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
L+VIDS+AA +R E D+ R L L LA+++N+A+V NQ++A
Sbjct: 208 YGLVVIDSLAAHYRSEELTSKGDFSSRDKRLLRTLHHLKGLARKHNVAVVFANQISA 264
>UniRef50_A2QR86 Cluster: Remark: alternate names = YDR004W; n=1;
Aspergillus niger|Rep: Remark: alternate names = YDR004W
- Aspergillus niger
Length = 516
Score = 85.4 bits (202), Expect = 1e-15
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST +D +L GG TG + E+ GESGSGKTQ +L + L KC++YI T
Sbjct: 79 ISTLDPTLDALLDGGIPTGYVTEVTGESGSGKTQFLLTLLLAAQLPAPRGLDKCAIYIST 138
Query: 551 EDLFPAKRFNQIMN---SIKSRDQDYGKNVFVEHISEAKDLQ---FCIRMQLPKLLQQNI 390
E R +Q++ + S Q + ++ A DL+ + QLP +++
Sbjct: 139 EAPLSTPRLSQLIEFHPYLSSLSQAHTPSLEKILSINAMDLEAQDHILNYQLPVAIKRYN 198
Query: 389 VSLIVIDSIAAPFRVESTDY-----VQRAGELRELAIMLITLAQQYNIAIVCINQVTASF 225
V L+VIDSI A +R E + + R+GEL L ML LA + N+A+V NQV+
Sbjct: 199 VGLVVIDSITANYRAEHSSHNLSGLSTRSGELSRLGHMLRNLAVEENVAVVVANQVSDRI 258
Query: 224 ADSDSIHPALGLAWSNMVSTRLRISKTTQSV 132
++ HP L + ++S+ I T Q V
Sbjct: 259 -EAAGRHPTLIRSNGGVISS---IPSTQQQV 285
>UniRef50_Q1DS44 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 591
Score = 85.0 bits (201), Expect = 2e-15
Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 19/185 (10%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST +DD+L GG TG + EI GESGSGKTQL+L+ + + L K ++YI T
Sbjct: 108 ISTLDPLLDDVLSGGILTGYVTEIAGESGSGKTQLLLHLLLSVQLPPPYGLRKNALYIST 167
Query: 551 EDLFPAKRFNQIMNS---IKSRDQDYGK----NVFVEHISEAKDLQFCIRMQLPKLLQQN 393
E R +Q+++ + S +D + NV + + + +P + +
Sbjct: 168 EADLATNRLSQLLDGHPLLISLPEDVQRPSLDNVLSITTVDLETQDHILNYHVPAAISRY 227
Query: 392 IVSLIVIDSIAAPFRVEST-----DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTAS 228
V L+VIDSI A +RVES+ + RA EL+ L +L LA +NIA+V NQ++
Sbjct: 228 NVGLVVIDSITANYRVESSTNNVCGLLDRAWELKRLGQLLRNLAVTHNIAVVVANQISDR 287
Query: 227 FADSD 213
+ D
Sbjct: 288 LSHLD 292
>UniRef50_A1CPK9 Cluster: DNA repair protein (Rad57), putative; n=6;
Trichocomaceae|Rep: DNA repair protein (Rad57), putative
- Aspergillus clavatus
Length = 886
Score = 83.8 bits (198), Expect = 4e-15
Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST +D++L GG G + E+ GESGSGKTQ +L + L K ++YI T
Sbjct: 443 ISTLDPTLDELLNGGVPVGYLTEVTGESGSGKTQFLLGLLLAVQLPEPRGLGKGAIYIST 502
Query: 551 EDLFPAKRFNQIMNS---IKSRDQDYG---KNVFVEHISEAKDLQFCIRMQLPKLLQQNI 390
E R +Q++ S + + +D +N+ + + + + QLP + +
Sbjct: 503 EAALATSRLSQLLESHPYLSTLPEDRAPTLENILSINAMDLETQDHILNYQLPVAITRYN 562
Query: 389 VSLIVIDSIAAPFRVESTDY-VQ----RAGELRELAIMLITLAQQYNIAIVCINQVTASF 225
V L+VIDSI A +R E T + VQ R+ EL +L +L LA +NIAIV NQV+ F
Sbjct: 563 VGLVVIDSITANYRAEHTSHNVQGLSTRSSELAKLGQLLRNLATAHNIAIVVANQVSDRF 622
Query: 224 ADSDSIHPAL 195
D +P L
Sbjct: 623 -DPLETNPTL 631
>UniRef50_Q8TUJ3 Cluster: DNA repair protein; n=6;
Euryarchaeota|Rep: DNA repair protein - Methanosarcina
acetivorans
Length = 267
Score = 81.4 bits (192), Expect = 2e-14
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 5/194 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLFP 537
+S+GC +D++LGGGF G + ++FG +G+GKT + + ++ + + ++I TE L P
Sbjct: 50 LSSGCKPLDELLGGGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQKVIFIDTEGLSP 109
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
RF QI ++ + G + E +S + Q+ ++ ++ +N V L+++DS +
Sbjct: 110 V-RFKQIAG--ENAKEIAGSIIIYEPLSFEE--QYSAVREVERIAGEN-VGLVILDSATS 163
Query: 356 PFRVESTDYVQRAGELRELAI---MLITLAQQYNIAIVCINQVTASFADSDSIHPALGLA 186
+R E D RELA L LA++Y A V NQV + + P G +
Sbjct: 164 YYRFELEDEDTGIKSRRELANQIGFLHALARKYGFAAVITNQVYSDVV-GGGVRPLGGSS 222
Query: 185 WSNMVSTRLRISKT 144
++ T LR+ KT
Sbjct: 223 LEHISKTILRLEKT 236
>UniRef50_A7E7I5 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 493
Score = 80.2 bits (189), Expect = 5e-14
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 20/182 (10%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST +D LGGG TG I EI GESG+GKTQ +L + + L ++YI T
Sbjct: 109 ISTLDDDMDRALGGGIPTGYITEITGESGAGKTQFLLTLLLSAQLPAPYGLTAPTLYIST 168
Query: 551 EDLFPAKRFNQIMNS---IKSRDQDYGKNVFVEHIS-EAKDLQFCIRMQLPKLLQQNIVS 384
E P R +QI+ + + S + + ++ + + +R Q+P ++++ +
Sbjct: 169 ESSLPTTRLSQILRTHPLLASHPSPPSLDKIISIVTPDLESQDHILRFQVPVAIKRHGIR 228
Query: 383 LIVIDSIAAPFRVE---------STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
L+++DS+AA +R E + QR+ EL +L +L LA+++ +AIV NQV
Sbjct: 229 LLILDSVAANYRAEFERPGMTKGGGNMAQRSAELVKLGQLLRDLAREFGVAIVVANQVAD 288
Query: 230 SF 225
F
Sbjct: 289 RF 290
>UniRef50_A4R1B5 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 548
Score = 79.8 bits (188), Expect = 7e-14
Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 19/201 (9%)
Frame = -2
Query: 734 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLP 576
+L + IST ++D LGGG TG + EI GESG+GKTQ +L + H L
Sbjct: 129 QLAARWSTISTLDPELDAALGGGIPTGYVTEITGESGAGKTQFLLSLLLAVQLPPPHGLG 188
Query: 575 KCSVYICTEDLFPAKRFNQIM--NSI---KSRDQDYGKNVFVEHISEAKDLQFCIRMQLP 411
+ ++YI TE +R Q++ N + S + ++ + + + + Q+P
Sbjct: 189 RKAMYIPTEAALSTRRVAQMLAANPLLLSASPRPSLDSILSLQPLGDIEAQDHILSFQVP 248
Query: 410 KLLQQNIVSLIVIDSIAAPFRVE-------STDYVQRAGELRELAIMLITLAQQYNIAIV 252
+ V LI++DS+AA FR E ST R+ EL L + L LA+ N+A+V
Sbjct: 249 LEAARRNVGLIILDSVAANFRAEYDAAGSRSTGLAARSAELVRLGMQLRNLARSLNLAVV 308
Query: 251 CINQVTASFADSDSIHPALGL 189
NQV F + P L L
Sbjct: 309 VANQVADRFESKIPMRPHLPL 329
>UniRef50_Q2NHD1 Cluster: RadB; n=1; Methanosphaera stadtmanae DSM
3091|Rep: RadB - Methanosphaera stadtmanae (strain DSM
3091)
Length = 232
Score = 79.8 bits (188), Expect = 7e-14
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = -2
Query: 695 SKIDDILGGGFRTGTINEIFGESGSGKTQL---VLYTSIHNLPKCSVYICTEDLFPAKRF 525
S +D +LGGG G I + +G GSGKT + +LY + N K ++Y+ TE +R
Sbjct: 17 SSLDKLLGGGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSK-AIYMDTEGGLSLERI 75
Query: 524 NQIMNSIKSRDQDYG---KNVFVEHISEAKDLQFCIRMQLPKLLQQN-IVSLIVIDSIAA 357
QI + D+G KN+++ ++ D Q + +L+++ + +++IDSI A
Sbjct: 76 QQIAGT------DFGSISKNIYILE-PKSFDEQILDIQNIEDILKKDKSIDMLIIDSIVA 128
Query: 356 PFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIHPALG 192
+RVE D + L L L+ L+++YN+AIV NQ+ + F D I +G
Sbjct: 129 LYRVEDGDPSEINKRLGRLMAKLLRLSREYNVAIVITNQIYSPFDSDDLIIEPIG 183
>UniRef50_UPI0000DB74C1 Cluster: PREDICTED: similar to DNA-repair
protein XRCC3 (X-ray repair cross-complementing protein
3); n=1; Apis mellifera|Rep: PREDICTED: similar to
DNA-repair protein XRCC3 (X-ray repair
cross-complementing protein 3) - Apis mellifera
Length = 169
Score = 79.4 bits (187), Expect = 9e-14
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYIC 555
++TGCSK D +L GG I +I+G + +GKTQL L + LPK ++YIC
Sbjct: 18 LTTGCSKFDTLLQGGITNRGITQIYGAASTGKTQLALQLCLTVQLPKTEGGLAAGAIYIC 77
Query: 554 TEDLFPAKRFNQIMN--SIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
TE +FP++R +++ I + G VFVEHIS ++L+
Sbjct: 78 TESIFPSRRLQELIQKLEITKKHGINGDLVFVEHISTIEELE------------------ 119
Query: 380 IVIDSIAAPFRVE--STDYVQRAGELRELAIMLITLAQQYNIAIVCINQ 240
I SIAAP+RVE + RA LR + L L + NI +VCINQ
Sbjct: 120 --IYSIAAPYRVEDWKDESNNRAKSLRIIGQQLHKLCKN-NICVVCINQ 165
>UniRef50_Q0V430 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 551
Score = 79.4 bits (187), Expect = 9e-14
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST ++D LGGG G + E+ GESG+GKTQL+L + + L K +VY+ T
Sbjct: 211 ISTLDEELDAALGGGIPPGYLVEVTGESGAGKTQLLLTLLLAVQLPPPYGLAKSAVYVST 270
Query: 551 EDLFPAKRFNQIMN------SIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNI 390
E + KR Q+++ S+ + ++ + + + + +R QLP ++++
Sbjct: 271 EAVLSTKRLAQLLSSHPALASVSTDEKPSLSKILSIQTPDLESQEHILRYQLPVAIKKHG 330
Query: 389 VSLIVIDSIAAPFRVE---------STDYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
+ L++IDS+AA +R E + +R +L +L +L LA+ IA+V NQV
Sbjct: 331 IGLVIIDSVAANYRAEFEKKGANNGAASMAKRGTQLVQLGALLRELARTEGIAVVVANQV 390
Query: 236 TASFADSDS 210
F + S
Sbjct: 391 ADRFTRAPS 399
>UniRef50_Q6FIZ6 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57; n=2; Saccharomycetales|Rep:
Similar to sp|P25301 Saccharomyces cerevisiae YDR004w
RAD57 - Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 466
Score = 79.0 bits (186), Expect = 1e-13
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Frame = -2
Query: 725 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------K 573
+ N + +TG ID++LGGG T I EIFGES +GK+QL++ + LP K
Sbjct: 81 IPNKQFTTGDLGIDEVLGGGISTNCITEIFGESSTGKSQLLMQLCLSVQLPISEGGLNAK 140
Query: 572 CSVYICTEDLFPAKRFNQIMNSIKSRDQ--DYGKNVFVEHISEAKDLQFCIRMQLPKLLQ 399
C V+I TE P R ++ + K + N+F + + + +QLP LL+
Sbjct: 141 C-VFITTEGDLPTNRLAGMIEARKDWHELGISQSNIFTVSCPDLISQEHIVNVQLPVLLE 199
Query: 398 QN--IVSLIVIDSIAAPFRVE-----STDYVQRAGELRELAIMLITLAQQYNIAIVCINQ 240
+N + LI+IDSI+ RVE D ++ + E+A L +A ++++AIV NQ
Sbjct: 200 RNKGEIKLIIIDSISHHLRVELDTKSFKDSLENKAYITEMAEKLQGIATKHSVAIVVANQ 259
Query: 239 V 237
V
Sbjct: 260 V 260
>UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;
Fungi/Metazoa group|Rep: DNA repair protein Rad51
homolog - Drosophila melanogaster (Fruit fly)
Length = 336
Score = 78.2 bits (184), Expect = 2e-13
Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------KCSVY 561
++STG ++D +LGGG TG+I EIFGE GKTQL ++ LP KC +Y
Sbjct: 98 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKC-MY 156
Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
I TE+ F +R I K + + NV + I+M L + +L
Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESR-YAL 215
Query: 380 IVIDSIAAPFRVESTDYVQRAGELRELAI---MLITLAQQYNIAIVCINQVTASFADS-- 216
+++DS A +R + + A L + ML LA ++ +A+V NQVTAS +
Sbjct: 216 LIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGAPG 275
Query: 215 --DSIHPALGLAWSNMVSTRLRISK 147
D+ P G ++ +TRL + K
Sbjct: 276 MFDAKKPIGGHIMAHSSTTRLYLRK 300
>UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1;
Schizosaccharomyces pombe|Rep: DNA repair protein rhp57
- Schizosaccharomyces pombe (Fission yeast)
Length = 354
Score = 77.8 bits (183), Expect = 3e-13
Identities = 73/256 (28%), Positives = 117/256 (45%), Gaps = 54/256 (21%)
Frame = -2
Query: 740 CRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ--------LVLYTSIH 585
C V + ++TG K+D+ L GG G + EI GESGSGK+Q + L S+
Sbjct: 65 CSASKVTSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLG 124
Query: 584 NLPKCSVYICTEDLFPAKRFNQIMNSIKSR----------DQDYGKNVFVEHISEAKDLQ 435
+ K +V+I TE KR ++ + R ++ G V+ + + +
Sbjct: 125 GMNKAAVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQE 184
Query: 434 FCIRMQLPKLLQQNIVSLIVIDSIAAPFRVE------------STDYVQRAGELRELAIM 291
I+ QLP L ++ + L+++DS+A+ +R E + +R +L +LA+
Sbjct: 185 HIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGKLAMT 244
Query: 290 LITLAQQYNIAIVCINQVTASF-ADSDSIH-----------------------PALGLAW 183
L TLA Q+ A+V NQV+ D D+I P+LGL W
Sbjct: 245 LRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLVW 304
Query: 182 SNMVSTRLRISKTTQS 135
+N +STRL + K T S
Sbjct: 305 TNNISTRLALIKKTDS 320
>UniRef50_UPI0000D55904 Cluster: PREDICTED: similar to Meiotic
recombination protein DMC1/LIM15 homolog; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Meiotic
recombination protein DMC1/LIM15 homolog - Tribolium
castaneum
Length = 356
Score = 77.4 bits (182), Expect = 4e-13
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 18/226 (7%)
Frame = -2
Query: 749 SFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ----LVLYTSIHN 582
+F E + KISTG + +D +LGGG + +I ++FGE+GSGKTQ L + T I
Sbjct: 100 AFEVSEACKQVFKISTGSANLDKLLGGGVESMSITQVFGEAGSGKTQIAHTLCVTTQIPT 159
Query: 581 LPKCS---VYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV-FVEHISEAKDLQFCIRMQL 414
++I TE F R QI + +N+ ++ + Q + +
Sbjct: 160 EDYSGGKVMFIDTERSFRPNRIRQIARRFHLSEDSVLQNILYIRAYNSEHQYQILKNVAV 219
Query: 413 PKLLQQNIVSLIVIDSIAAPFRVESTD---YVQRAGELRELAIMLITLAQQYNIAIVCIN 243
+ L+++DSI A FR + + R +L E +L ++++YN+A+ N
Sbjct: 220 KFHEDTGVFKLLIVDSIIALFRNDFMGRGVLLNRQQKLAETMSLLKKISEEYNVAVFITN 279
Query: 242 QVTASFAD-------SDSIHPALGLAWSNMVSTRLRISKTTQSVII 126
QVT S + D + P G ++ +TR+ + K T +V I
Sbjct: 280 QVTTSMNNKFPLLTIGDDVKPVGGNILAHSSTTRVALRKLTGNVRI 325
>UniRef50_Q6L2I8 Cluster: DNA repair and recombination protein RadB;
n=1; Picrophilus torridus|Rep: DNA repair and
recombination protein RadB - Picrophilus torridus
Length = 228
Score = 77.4 bits (182), Expect = 4e-13
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 3/192 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT--QLVLYTSIHNLPKCSVYICTEDLF 540
K+ + ID+++ GG G I EI+G+ GSGKT ++ S+ K +YI TE F
Sbjct: 12 KLPSNVKCIDELMNGGLEPGIITEIYGQGGSGKTNISMIFARSVLLSGKRVIYIDTEG-F 70
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
+RF+QI D+ KN+ + S D I ++ KL+++ SL+++DS+
Sbjct: 71 STERFSQI-----CPDKSLYKNMVLFRASSIDDQDLAI-IRSEKLMKEKNYSLLILDSLT 124
Query: 359 APFRVE-STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIHPALGLAW 183
+ FR+E D R + ML +A +YNI ++ NQ+ D S+ P G
Sbjct: 125 SFFRIEKGNDISSRMSGFEKELGMLNNIAVRYNIPVLLTNQIYEDI-DKKSLEPFGGFFI 183
Query: 182 SNMVSTRLRISK 147
+ + ++ K
Sbjct: 184 DHSMKAIYKLEK 195
>UniRef50_Q9HPF2 Cluster: DNA repair and recombination protein radB;
n=5; Halobacteriaceae|Rep: DNA repair and recombination
protein radB - Halobacterium salinarium (Halobacterium
halobium)
Length = 236
Score = 77.4 bits (182), Expect = 4e-13
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYICTEDLFP 537
+ TGC +D++LGGG GT+ +++G +GKT + L T++ +VY+ TE L
Sbjct: 8 LPTGCGALDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVYVDTEGLSL 67
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
A RF Q++ + + + NV V S+A D + + LIV+DS+
Sbjct: 68 A-RFQQLLEARATDPEAASANVIV---SDAHDFDEQAQAVRDTADFADRADLIVVDSVTG 123
Query: 356 PFRVESTDYVQRAGELRELA---IMLITLAQQYNIAIVCINQV-TASFADSDSIHPALGL 189
+R+ LR++A L++LA+++++A+V NQV T DSD P G
Sbjct: 124 FYRLARGGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTDVDNDSDRARPLGGH 183
Query: 188 AWSNMVSTRLRISK 147
++ T LR+ +
Sbjct: 184 TLAHWTGTVLRLDR 197
>UniRef50_Q6CMV0 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57 DNA repair protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P25301
Saccharomyces cerevisiae YDR004w RAD57 DNA repair
protein - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 480
Score = 77.0 bits (181), Expect = 5e-13
Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 21/179 (11%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-------CSVYICT 552
+TG +D +LGGG + I EIFGES +GK+QL+L ++ LP+ SVYI T
Sbjct: 90 TTGNLGLDKLLGGGIYSKGITEIFGESSTGKSQLLLQLALSVQLPEDMNGLNGQSVYITT 149
Query: 551 EDLFPAKRFNQIMNSIKSRDQDYG-------KNVFVEHISEAKDLQFCIRMQLPKLLQQN 393
E P +R I+ S +D G K +F ++ + + +QLP LL+++
Sbjct: 150 EGDLPTRRLKSIIEQ-SSLFKDEGGDCLVSQKKIFTVTCNDWANQEHVTTVQLPVLLERH 208
Query: 392 -IVSLIVIDSIAAPFRVE---STDYVQRAGE--LRELAIMLITLAQQYNIAIVCINQVT 234
+ L++IDSI+ RVE T R+ + +A L++LAQ++N+AIV NQV+
Sbjct: 209 PSIKLVIIDSISHHLRVELQSKTFQESRSNRYIIDSMAENLLSLAQKHNLAIVVANQVS 267
>UniRef50_Q0D0U2 Cluster: Putative uncharacterized protein; n=1;
Aspergillus terreus NIH2624|Rep: Putative
uncharacterized protein - Aspergillus terreus (strain
NIH 2624)
Length = 743
Score = 76.6 bits (180), Expect = 6e-13
Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST +D +L GG TG + E+ GES SGKTQ +L + L K ++YI T
Sbjct: 286 ISTLDPALDALLHGGIPTGYLTEVTGESASGKTQFLLTLLLAAQLPAPRGLNKRAIYIST 345
Query: 551 EDLFPAKRFNQIMN-----SIKSRDQDYG---KNVFVEHISEAKDLQFCIRMQLPKLLQQ 396
E R Q++ S S+D D +N+ + + + + QLP + +
Sbjct: 346 EAPIATSRLTQMLEFHPYLSTLSQDADIVPSLENILSINAMDLESQDHILNYQLPVAVSR 405
Query: 395 NIVSLIVIDSIAAPFRVESTDY-----VQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
V L++IDSI + +R E + + R+GEL +L ML LA + +IAIV NQV+
Sbjct: 406 YNVGLVIIDSITSNYRAEHSSHNLLGLSTRSGELTKLGQMLRNLAVKEDIAIVVANQVSD 465
Query: 230 SFADSDSI 207
F + +
Sbjct: 466 RFEGMEGV 473
>UniRef50_A6RPX0 Cluster: Putative uncharacterized protein; n=2;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 485
Score = 76.6 bits (180), Expect = 6e-13
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 20/182 (10%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST +D LGGG G I E+ GESG+GKTQ +L + H L ++YI T
Sbjct: 109 ISTLDDDMDRALGGGIPAGYITEVTGESGAGKTQFLLTLLLSAQLPAPHGLASPTLYIST 168
Query: 551 EDLFPAKRFNQIMNS---IKSRDQDYG-KNVFVEHISEAKDLQFCIRMQLPKLLQQNIVS 384
E P R +Q++ + + S V + + +R Q+P ++++ +
Sbjct: 169 ESSLPITRLSQLLRTHPLLASHPSPPSLDRVISISTPDLESQDHILRFQVPVAIKRHGIR 228
Query: 383 LIVIDSIAAPFRVE---------STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
L+++DS+AA +R E + QR+ EL +L +L LA+++ +AIV NQV
Sbjct: 229 LLILDSVAANYRAEFERPGVTKGGGNMAQRSAELVKLGQLLRDLAREHGVAIVVANQVAD 288
Query: 230 SF 225
F
Sbjct: 289 RF 290
>UniRef50_Q8TVF0 Cluster: RadA recombinase; n=1; Methanopyrus
kandleri|Rep: RadA recombinase - Methanopyrus kandleri
Length = 317
Score = 76.6 bits (180), Expect = 6e-13
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Frame = -2
Query: 743 TCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH------- 585
T +L K +I+TG S +D+ILGGG G + E G GSGK+Q+V ++
Sbjct: 66 TLEKLERKRRRITTGSSALDEILGGGVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPEEE 125
Query: 584 -NLPKCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPK 408
L +++I TE R + ++ + +NVFV + ++ Q + K
Sbjct: 126 GGLESKAIFIDTEGTVSPGRIKGMAEALGLDPGEALRNVFVTQVRSVEE-QMRAAEEAHK 184
Query: 407 LLQQNIVSLIVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
L ++ + L+VIDS+ A FR E + D +R L + L LA +++A+V NQV
Sbjct: 185 LCEREDIGLVVIDSLTAHFRAEYSKLGDVSERQARLMKHVDQLRNLAMDHDVAVVFTNQV 244
>UniRef50_Q93YY9 Cluster: RAD51C protein; n=1; Chlamydomonas
reinhardtii|Rep: RAD51C protein - Chlamydomonas
reinhardtii
Length = 352
Score = 76.2 bits (179), Expect = 8e-13
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 36/216 (16%)
Frame = -2
Query: 689 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYICTEDLFPA 534
+D +LGGG G + E G G GKTQL + +++ +P+ +VYI TE F A
Sbjct: 100 LDALLGGGVAAGQVTEFCGVPGVGKTQLGMQLAVNVQIPRSLSGPEGQAVYIDTEGSFMA 159
Query: 533 KRFNQI-------MNSIKSRDQDYG------------------KNVFVEHISEAKDLQFC 429
+R I + SI + G + +++ + + +
Sbjct: 160 ERCADIAEGAVRHVQSILEKKASMGQPELLHDGERPFTLENVMRGIYLFRVHDHVEQLGL 219
Query: 428 IRMQLPKLLQQ-NIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIV 252
+ M LP+ L+Q + V LIVIDS+ FR + D QR + +A LI+LAQ +N+A+V
Sbjct: 220 VNM-LPRFLEQYSQVRLIVIDSVTFHFRQDFPDMAQRTRVVTGMAQQLISLAQTHNVAVV 278
Query: 251 CINQVTASFAD--SDSIHPALGLAWSNMVSTRLRIS 150
+NQVT + + PALG +W + STR+ ++
Sbjct: 279 LMNQVTTKVLEGGGSKLVPALGESWGHAASTRVMLT 314
>UniRef50_Q55075 Cluster: DNA repair and recombination protein radA;
n=12; Archaea|Rep: DNA repair and recombination protein
radA - Sulfolobus solfataricus
Length = 324
Score = 76.2 bits (179), Expect = 8e-13
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 12/173 (6%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYI 558
KISTG +D +L GG T T+ E FGE GSGKTQL S++ L +VYI
Sbjct: 88 KISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI 147
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQN-IVSL 381
TE F +R + ++ + N++ D Q I L +L+ ++ + L
Sbjct: 148 DTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT-DHQIAIVDDLQELVSKDPSIKL 206
Query: 380 IVIDSIAAPFRVE---STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
IV+DS+ + FR E + R +L + L LA+ Y+IA++ NQV A
Sbjct: 207 IVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259
>UniRef50_A2G1B8 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 328
Score = 75.8 bits (178), Expect = 1e-12
Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 13/241 (5%)
Frame = -2
Query: 686 DDILGGGFRT--GTINEIFGESGSGKTQLVLYTSIHNL----PKCSVYICTEDLFPAKRF 525
DDIL + I E G +G GK+ ++ + I+ + + V I TE P +R
Sbjct: 83 DDILDNLIKIPKNGIIEFTGPAGCGKSNIIYHLLINQIISDPERRVVLISTEGHVPTQRL 142
Query: 524 NQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIV--SLIVIDSIAAPF 351
++I ++ + ++ +E + I + LP+L + S++ IDSIAA F
Sbjct: 143 HKIAEMRGLDPEEVLSMILIKEATEVVEFNQIINVTLPQLFSTCVPPPSIVAIDSIAALF 202
Query: 350 RVE--STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIH--PALGLAW 183
R E QRA L +++ +L ++ YN I NQVTA+ + P+LGLAW
Sbjct: 203 RSEFDMNAAKQRAQMLFDMSTILKWISASYNCLIFTTNQVTANMGPFTTQEWVPSLGLAW 262
Query: 182 SNMVSTRLRISKTTQSVIIDDSGVCKSDSGGQNK-LFAREISVVFAPDLANSSTLFTITS 6
SN V+ R+R++K++ I + ++K + R + V +P + F I+
Sbjct: 263 SNCVNMRVRVTKSSMKRDIQEEVPTAYGRNSESKTVTLRTMYVEISPRAQDVKATFYISD 322
Query: 5 N 3
+
Sbjct: 323 S 323
>UniRef50_Q6YU07 Cluster: Putative XRCC3; n=2; Oryza sativa|Rep:
Putative XRCC3 - Oryza sativa subsp. japonica (Rice)
Length = 290
Score = 75.4 bits (177), Expect = 1e-12
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 22/211 (10%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT----QLVLYTSIHNLPKCSVYICTED 546
K+S GC +D +L GG ++ EI GES SGKT QL L + L +++ ++
Sbjct: 42 KLSLGCPVLDRLLSGGLPPASVTEIAGESASGKTQLCLQLALLAPLSPLSASCLFLHSDL 101
Query: 545 LFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLL----QQNIVSLI 378
FP +R + + KSR D +V V DL + + +LL + V LI
Sbjct: 102 PFPLRRLRGL--APKSR-PDLLDHVLVAAAHSPSDL-ISLLSRAQRLLAHPGRLPPVRLI 157
Query: 377 VIDSIAAPFRVE----STDYVQRAGELRELAIMLITLAQQYNIAIVCINQV--------- 237
++DSIA+ FR + D +R+ ++ L LA ++ +V NQV
Sbjct: 158 LVDSIASLFRADFDASPADLKRRSALFFRISAKLKELAHRHRCVVVVTNQVVDVVEGEAG 217
Query: 236 -TASFADSDSIHPALGLAWSNMVSTRLRISK 147
T +++ + PALG+AW+N V+TRL +++
Sbjct: 218 NTVAWSSGRRVSPALGIAWANCVNTRLFLTR 248
>UniRef50_Q54QU4 Cluster: AAA ATPase domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: AAA ATPase
domain-containing protein - Dictyostelium discoideum AX4
Length = 564
Score = 75.4 bits (177), Expect = 1e-12
Identities = 69/220 (31%), Positives = 99/220 (45%), Gaps = 42/220 (19%)
Frame = -2
Query: 749 SFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH----- 585
S +L + + K+STGC +D LGGG I EI GESGSGKTQL + S+
Sbjct: 154 SLELEKLQISSIKLSTGCKIMDKCLGGGISPIGITEIAGESGSGKTQLCIQLSLQVQLPF 213
Query: 584 ---NLPKCSVYICTEDLFPA------------KRFNQIMNSIKSRD--------QDYGK- 477
L +YI TE FP K N N+ + + Q Y K
Sbjct: 214 EMGGLNGACLYITTEPPFPTKRLNQMYTVKSGKNTNNNTNNNNNNNNGQQQQQQQYYSKL 273
Query: 476 ---------NVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRVE----ST 336
N+F++ + L + Q+ L++ + L++IDSIAA R E +
Sbjct: 274 SNSGVSPLDNIFIQSTTTIDSLMDLLINQITGYLEKKTIRLLIIDSIAALLRHEYGNEKS 333
Query: 335 DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADS 216
+ +++ L LA L + +QY I IV +NQVT F DS
Sbjct: 334 EIIEKTKLLWSLANRLKLINEQYGITIVVVNQVTDFFIDS 373
>UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 541
Score = 66.5 bits (155), Expect(2) = 2e-12
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH---NLPKCS--VYICTED 546
ISTG +D LGGG TG I EIFG SG GK+ ++ ++ N C ++I TE
Sbjct: 88 ISTGLHTLDSDLGGGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDCKECIHIGTES 147
Query: 545 LFPAKRFNQIMNSIKSRDQDYG-KNVFVEHISEAKDLQFCIRMQLPKLLQQNI--VSLIV 375
KR +QI S +S+ N+ + + + I QLP L+ V L+V
Sbjct: 148 FLETKRLHQIQQSYESKGSTVSLDNISYIYCQDLESQDHIIYTQLPIHLESKAGKVRLLV 207
Query: 374 IDSIAAPFRVEST 336
IDSIA R E +
Sbjct: 208 IDSIAQHLRREGS 220
Score = 28.3 bits (60), Expect(2) = 2e-12
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -2
Query: 344 ESTDYVQRAGELRELAIM---LITLAQQYNIAIVCINQVTASFADSDSIHPALGL 189
+ST Y R + L ++ L LA++YNIA+V +NQV +D S +P G+
Sbjct: 260 KSTKYRNRMTKQHYLYLLHRHLQKLAKKYNIAVVVVNQV----SDHASTYPLGGI 310
>UniRef50_O28184 Cluster: DNA repair and recombination protein radB;
n=1; Archaeoglobus fulgidus|Rep: DNA repair and
recombination protein radB - Archaeoglobus fulgidus
Length = 221
Score = 74.5 bits (175), Expect = 3e-12
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSV-YICTEDLFPA 534
I TG ID +LGGG TGT+ +I+G G+GKT L L + + + V YI TE L
Sbjct: 6 IPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQFKVAYIDTEGL-SG 64
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
+R QI D+ NVFV + + I+ + KL + V L+++D +
Sbjct: 65 ERVRQIFG-----DERLFSNVFVYEVYRFRQQGVAIQ-EAEKLCRSEKVKLVIVDCFTSL 118
Query: 353 FRVESTD---YVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
+R E D ++ EL L+ +A++Y++A+V NQ+
Sbjct: 119 YRSELEDDRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQM 160
>UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=39;
Eukaryota|Rep: Meiotic recombination protein DMC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 334
Score = 74.5 bits (175), Expect = 3e-12
Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPK-------CSVYIC 555
+STG ++D ILGGG T +I E+FGE GKTQ+ + LP+ YI
Sbjct: 96 LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYID 155
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIV 375
TE F +R QI + + NV ++ Q + QL + L LIV
Sbjct: 156 TEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEH-QMELVEQLGEELSSGDYRLIV 214
Query: 374 IDSIAAPFRVE---STDYVQRAGELRELAIMLITLAQQYNIAIVCINQV------TASFA 222
+DSI A FRV+ + +R +L + L LA+++N+A+ NQV +A FA
Sbjct: 215 VDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFA 274
Query: 221 DSDSIHPALGLAWSNMVSTRLRISK 147
+D P G ++ +TR+ + K
Sbjct: 275 SADGRKPIGGHVLAHASATRILLRK 299
>UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative DNA repair
protein - Dictyostelium discoideum AX4
Length = 381
Score = 74.1 bits (174), Expect = 3e-12
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 29/216 (13%)
Frame = -2
Query: 719 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT----QLVLYTSIH----NLPKCSV 564
N I T CS+ID +L GG I EI G G GKT QL++ TSI + ++
Sbjct: 61 NNNIITFCSEIDQMLNGGTPLKKITEICGVPGIGKTNMAFQLLVNTSIPFDLGGVQGKAI 120
Query: 563 YICTEDLFPAKRFNQIMNSIKSR------DQDYGKNVFVEHISEAKDLQFCIRM------ 420
YI TE + +R ++ + + + ++ + + + R+
Sbjct: 121 YIDTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLNSIYYYRVYHYIEI 180
Query: 419 -----QLPKLLQQNI-VSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIA 258
QLP L++N V LIV+DSI PFR + D R L LA L+ +A +YN+A
Sbjct: 181 ISLIHQLPLFLEKNKDVKLIVVDSITYPFRCDFKDMGLRTRSLLSLAQNLMNIATRYNLA 240
Query: 257 IVCINQVTASFADSDS---IHPALGLAWSNMVSTRL 159
+V +NQVT + + + P LG +W+++ + R+
Sbjct: 241 VVVMNQVTTKISPNQKESILVPYLGESWTHICTYRM 276
>UniRef50_A6QWV8 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 587
Score = 73.7 bits (173), Expect = 4e-12
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 19/178 (10%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP------KCSVYICT 552
+ST +D +L GG TG + E+ GESG GKTQ +L+ + LP + ++Y+ T
Sbjct: 111 VSTLDPVLDRVLAGGISTGYVTELAGESGCGKTQFLLHLLLSVQLPPPYGTSQKALYLST 170
Query: 551 EDLFPAKRFNQIM--NSIKSRDQDYGKNVFVEHISEAK--DLQ---FCIRMQLPKLLQQN 393
E P R +Q++ + + S + +E+I DL+ + Q+P + +
Sbjct: 171 ESNLPTNRLSQLLEEHPVISTLPEGSPRPSLENILSITTIDLESQDHILNYQIPVAVSRY 230
Query: 392 IVSLIVIDSIAAPFRVES-----TDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ L+VIDSI A +R ES + RA +L++L L LA + NIAIV NQV+
Sbjct: 231 NIGLVVIDSITANYRAESDLDNVAGLLARAWQLKKLGQFLRNLAAKQNIAIVVANQVS 288
>UniRef50_Q9V2F6 Cluster: DNA repair and recombination protein radB;
n=5; Thermococcaceae|Rep: DNA repair and recombination
protein radB - Pyrococcus abyssi
Length = 239
Score = 73.7 bits (173), Expect = 4e-12
Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDL 543
K ++TG +D++LGGG G I +++G +GKT + + N K + Y+ TE
Sbjct: 9 KGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVA-YVDTEGG 67
Query: 542 FPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIR-MQLPKLLQQNIVSLIVIDS 366
F +R Q+ S + D + + F+ I E DL R + K + + SL+V+DS
Sbjct: 68 FSPERLKQMAES-RGLDPEKALSKFI--IFEPMDLNEQRRIISKLKTVVSDKFSLVVVDS 124
Query: 365 IAAPFRVE-STDYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
+ A +R E S D+V+ A +L+ +L LA++ N+A++ +NQV
Sbjct: 125 LTAHYRAEGSRDHVELAKQLQ----VLQWLARKKNVAVIVVNQV 164
>UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to
RAD51L2/RAD51C protein; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RAD51L2/RAD51C
protein - Strongylocentrotus purpuratus
Length = 425
Score = 73.3 bits (172), Expect = 6e-12
Identities = 64/207 (30%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYIC 555
I T C ++D++LGGG I EI G G GKTQ + + +P +VYI
Sbjct: 123 IITFCEELDEMLGGGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGGVEGEAVYID 182
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQ-------------FCIRMQL 414
TE F +R I + G ++ + K L + L
Sbjct: 183 TEGSFIPQRAWGIAQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHVELLALVNLL 242
Query: 413 PKLLQQNI-VSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
P+ L +N V LI++DSIA FR + D R L LA I +A QYN+A+V NQ+
Sbjct: 243 PEFLSKNPKVKLIIVDSIAFHFRHDFDDMSLRTRLLNGLAQNFIRIATQYNLAVVLTNQM 302
Query: 236 TASFADSDS-IHPALGLAWSNMVSTRL 159
T + S + PALG +W + + R+
Sbjct: 303 TTKIGEGTSHLIPALGESWGHACTIRV 329
>UniRef50_Q757K4 Cluster: AER008Wp; n=1; Eremothecium gossypii|Rep:
AER008Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 510
Score = 73.3 bits (172), Expect = 6e-12
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 17/174 (9%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------KCSVYIC 555
+TG ID +L GG T I E+FGES SGK+Q ++ S+ LP +C V+I
Sbjct: 88 TTGDVGIDALLNGGIYTHGITEVFGESSSGKSQFLMQLSLAVQLPLELDGSAGQC-VFIT 146
Query: 554 TEDLFPAKRFNQIMNS--IKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQN-IVS 384
TE P KR ++ S I S + N+F ++ + +QLP LL++N +
Sbjct: 147 TESDLPTKRIESMIKSREIFSAGRVSQSNIFTATCNDWTSQNHILSVQLPILLERNPNIR 206
Query: 383 LIVIDSIAAPFRVE-STDYVQRAGELR----ELAIMLITLAQQYNIAIVCINQV 237
L++IDSI+ RVE + Q++ + R ++A L+ L+Q++ +A+V NQV
Sbjct: 207 LVIIDSISHHLRVELAAKTFQQSLDNRSLIDQMAQNLLHLSQKHAVAVVVANQV 260
Score = 33.5 bits (73), Expect = 5.7
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = -2
Query: 215 DSIHPALGLAWSNMVSTRLRISKT-TQSVIIDDSGVCKSDSGGQNKLF--AREISVVFA 48
D+ P LGL W+N +STR+++SKT S +I++ + L+ R + VVF+
Sbjct: 427 DTKTPNLGLTWANHLSTRIKLSKTHIASQLIEEQDLDYDSIVDSTSLWQVKRSLKVVFS 485
>UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=42;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 4 -
Homo sapiens (Human)
Length = 328
Score = 72.1 bits (169), Expect = 1e-11
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 13/205 (6%)
Frame = -2
Query: 734 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS---IHNLPKCSV 564
EL +STG +D +L G TG + EI G GSGKTQ+ L + H L + +
Sbjct: 74 ELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVL 133
Query: 563 YICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDL--QFCIRMQLPKLLQQNI 390
Y+ + A R Q++ + +++ + + + A D+ + +L + Q +
Sbjct: 134 YVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQV 193
Query: 389 ------VSLIVIDSIAAPFRVESTDYVQRAG--ELRELAIMLITLAQQYNIAIVCINQVT 234
V ++V+DS+ A QR G + +LA L TLA+ +A+V N +T
Sbjct: 194 TGSSGTVKVVVVDSVTAVVS-PLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHIT 252
Query: 233 ASFADSDSIHPALGLAWSNMVSTRL 159
DS + PALG +WS + STR+
Sbjct: 253 RD-RDSGRLKPALGRSWSFVPSTRI 276
>UniRef50_UPI00006CB33C Cluster: hypothetical protein
TTHERM_00459230; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00459230 - Tetrahymena
thermophila SB210
Length = 356
Score = 71.7 bits (168), Expect = 2e-11
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 11/172 (6%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL-----VLYTSIHNL--PKCSVYIC 555
+ISTG +DDIL GG + +I E +GE SGKTQ+ VL S + P +YI
Sbjct: 110 RISTGSKALDDILNGGIESQSITEFYGEYRSGKTQIAHTACVLAQSQDHCQSPGKVLYID 169
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLL-QQNIVSLI 378
TE F +R QI S + +Y + + + D Q + ++ +L+ ++N +L+
Sbjct: 170 TEGTFRPERICQIA-SHYGMEGEYALSNIIYGRAYNVDQQNTLLIKGAQLMVEENCFALL 228
Query: 377 VIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
V+DSI A FR + + D +R L + L +A ++NIA++ NQV A
Sbjct: 229 VVDSIMANFRCDFSGRGDLSERQQALGKFMSRLQRMAAEFNIAVIITNQVMA 280
>UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1
homolog - Leishmania major
Length = 364
Score = 71.3 bits (167), Expect = 2e-11
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 17/206 (8%)
Frame = -2
Query: 713 KISTGCSKIDDILGGG-FRTGTINEIFGESGSGKTQLVLYTSIH-NLP-------KCSVY 561
+ISTG + +D +LGGG + +I E FGE +GKTQ+ + LP +VY
Sbjct: 125 RISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVY 184
Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
+ TE F +R I N+ V + + M K+ + SL
Sbjct: 185 VDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQF-SL 243
Query: 380 IVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVT-----ASF 225
+V+DSI A FRV+ + + +R +L ++ LI +A+++NIA+ NQV AS
Sbjct: 244 LVVDSITALFRVDFSGRGELAERQQKLAKMLSQLIKIAEEFNIAVYITNQVVSDPGGASM 303
Query: 224 ADSDSIHPALGLAWSNMVSTRLRISK 147
+D P G ++ +TRL + K
Sbjct: 304 FVADPKKPVGGHILAHASTTRLSLRK 329
>UniRef50_P25301 Cluster: DNA repair protein RAD57; n=2;
Saccharomyces cerevisiae|Rep: DNA repair protein RAD57 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 460
Score = 71.3 bits (167), Expect = 2e-11
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 18/169 (10%)
Frame = -2
Query: 689 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH---NLP------KCSVYICTEDLFP 537
+D++LGGG T I EIFGES +GK+QL++ ++ + P KC VYI TE P
Sbjct: 107 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKC-VYITTEGDLP 165
Query: 536 AKRFNQIMNSIKSRDQ--DYGKNVFVEHISEAKDLQFCIRMQLPKLLQQN--IVSLIVID 369
+R +++S + ++ N+F ++ + + I +QLP LL+++ + L++ID
Sbjct: 166 TQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIKLVIID 225
Query: 368 SIAAPFRVESTDYVQRAGE-----LRELAIMLITLAQQYNIAIVCINQV 237
SI+ RVE + R + L +A L LA Y++++V NQV
Sbjct: 226 SISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQV 274
Score = 35.1 bits (77), Expect = 1.9
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -2
Query: 203 PALGLAWSNMVSTRLRISKTTQSVIIDDSGVCKSDSGGQNKLF---AREISVVFAPDLAN 33
P LGL WSN VSTR+ + K+ ++ I G GG + F R + VV++
Sbjct: 386 PNLGLTWSNHVSTRILLQKSFKASTIIQRGEAHLYKGGDSASFWQVKRTMKVVYSTFAKP 445
Query: 32 SSTLFTIT 9
+ IT
Sbjct: 446 GQIAYQIT 453
>UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=32;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 3 -
Homo sapiens (Human)
Length = 376
Score = 71.3 bits (167), Expect = 2e-11
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 30/214 (14%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYIC 555
I T CS +DDILGGG EI G G GKTQL + ++ +P+C +V+I
Sbjct: 100 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFID 159
Query: 554 TEDLFPAKRFNQIMNSI---------KSRDQDYGKNV-------FVEHIS--EAKDLQFC 429
TE F R + + K + +++ K + + HI +D
Sbjct: 160 TEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTEL 219
Query: 428 IRMQ--LPKLLQQNI-VSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIA 258
+ LP L ++ V L+++D IA PFR + D R L LA +I+LA + +A
Sbjct: 220 LAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLA 279
Query: 257 IVCINQVTASFADSDS-IHPALGLAWSNMVSTRL 159
++ NQ+T + + + PALG +W + + RL
Sbjct: 280 VILTNQMTTKIDRNQALLVPALGESWGHAATIRL 313
>UniRef50_Q18FI4 Cluster: DNA repair and recombination protein RadB;
n=2; Halobacteriaceae|Rep: DNA repair and recombination
protein RadB - Haloquadratum walsbyi (strain DSM 16790)
Length = 257
Score = 70.9 bits (166), Expect = 3e-11
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 29/217 (13%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHN--LPKCSVYICTEDLFP 537
+STGC +D +LGGGF GT+ +++G +GKT ++L ++H +VY+ TE +
Sbjct: 5 LSTGCQSLDSLLGGGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTEGI-S 63
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHI--SEAKDLQFCIRMQLPKLLQQNIVSLIVIDSI 363
+ RF QI + + ++ + S+A D + N LI++DS
Sbjct: 64 SDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILDSA 123
Query: 362 AAPFRV-------------------ESTDYVQRA--GE-LRELAIM---LITLAQQYNIA 258
+R+ E+T+ + A G+ LR L L++LA+++N+A
Sbjct: 124 TGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHNLA 183
Query: 257 IVCINQVTASFADSDSIHPALGLAWSNMVSTRLRISK 147
+V NQV D+D + P G + LR+ +
Sbjct: 184 VVITNQVFTD-PDTDRVRPLGGYTLEHWTGAVLRLER 219
>UniRef50_A5UKT8 Cluster: DNA repair protein, RadB; n=1;
Methanobrevibacter smithii ATCC 35061|Rep: DNA repair
protein, RadB - Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861)
Length = 234
Score = 70.9 bits (166), Expect = 3e-11
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
Frame = -2
Query: 719 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT--QLVLYTSIHNLPKCSVYICTED 546
N KI T S ID++L GG GT+ +IFG GSGK+ LVL ++ K VY+ TE
Sbjct: 10 NHKIPTN-SGIDNLLDGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYVDTEG 68
Query: 545 LFPAKRFNQIMN----SIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI 378
R QI I + + F+E K ++ IR + V L
Sbjct: 69 GISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRK------HHDDVDLC 122
Query: 377 VIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSD 213
V+DS A +RV+ + EL + +L +A+ Y++A+V NQ+ +SF D +
Sbjct: 123 VLDSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDDDN 177
>UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 711
Score = 70.5 bits (165), Expect = 4e-11
Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 11/157 (7%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHN-----LPKCSVYICTED 546
ISTG +D+ LGGG G ++E+FG SG GK+Q V Y IHN V++ TE
Sbjct: 201 ISTGLPDLDEQLGGGIPIGEVSEVFGASGCGKSQFV-YQIIHNSILQGAKNTVVHVATES 259
Query: 545 LFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQ---FCIRMQLPKLLQQNI--VSL 381
+KR I S S + DL+ + QLP LQ+NI L
Sbjct: 260 FMESKRLKDIFESDSSSSSSLSSKLDRMSYIYCPDLETQDHILFTQLPIHLQENIGKTKL 319
Query: 380 IVIDSIAAPFRVESTDYVQRAGELR-ELAIMLITLAQ 273
+VIDSIA FR E D + A L+ ++ ++ LAQ
Sbjct: 320 LVIDSIAQHFRRE--DAMSTASTLKNQIDEQVLELAQ 354
Score = 37.1 bits (82), Expect = 0.46
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -2
Query: 344 ESTDYVQRAGELRELAIM---LITLAQQYNIAIVCINQVTASFADSDSI 207
+S Y R+ +L L M L LA+QYNIA+V INQV+A D D +
Sbjct: 376 KSAKYATRSTKLHYLCQMYRHLARLARQYNIAVVIINQVSAHTNDYDDL 424
>UniRef50_Q9LQQ2 Cluster: DNA repair protein RAD51 homolog 4; n=6;
Arabidopsis thaliana|Rep: DNA repair protein RAD51
homolog 4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 322
Score = 69.3 bits (162), Expect = 9e-11
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS---IHNLPKCSVYICTEDLF 540
+STG + D +L GGFR G + E+ G S SGKTQ + + N +Y+ T + F
Sbjct: 89 LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSF 148
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEA-----------KDLQFCIRMQLPKLLQQN 393
A+R Q + S S D G+ V + +DL+ +R+Q+ + ++
Sbjct: 149 SARRIAQFICS--SSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMN--VNES 204
Query: 392 IVSLIVIDSIAAPFR-VESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADS 216
+ L+V+DSI++ + Q + + +L LA +++IAI+ N + +
Sbjct: 205 RLRLLVVDSISSLITPILGGSGSQGRALMVAIGYLLKKLAHEHSIAILVTNHTVGAGGEG 264
Query: 215 DSIHPALGLAWSNMVSTRLRISK 147
PALG W ++ RL +S+
Sbjct: 265 GKTKPALGETWKSIPHVRLSLSR 287
>UniRef50_Q69KV4 Cluster: Trad-like protein; n=3; Oryza sativa|Rep:
Trad-like protein - Oryza sativa subsp. japonica (Rice)
Length = 272
Score = 68.5 bits (160), Expect = 2e-10
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 18/212 (8%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK---CSVYICTEDLF 540
+ TG +D +LGGG R G + EI G+S SGKTQ+ L ++ H + +Y+ T + F
Sbjct: 50 LPTGLQGVDALLGGGLRQGQLTEITGQSSSGKTQVCLCSASHVAARQLGVVMYLDTSNSF 109
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEA---KDL-----QFCIRMQLPKLLQQ---- 396
R +I++ KNV +E + + K + F + QL L+
Sbjct: 110 SPSRIARIVDGFPISLVREPKNVRLERVMSSIICKSVFDIFDLFEVLHQLELSLKSKVNN 169
Query: 395 --NIVSLIVIDSIAAPFR-VESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASF 225
N + L++IDSI++ + Y + + +A++L LA ++N++++ N + A
Sbjct: 170 GGNKICLLIIDSISSILAPINGGKYPRGRSMMISVAMILKKLAYEHNLSVLVTNHMVAG- 228
Query: 224 ADSDSIHPALGLAWSNMVSTRLRISKTTQSVI 129
+ + PALG +W + RL IS+ S I
Sbjct: 229 --NGAPKPALGESWKTVPHVRLVISRERGSKI 258
>UniRef50_Q01C18 Cluster: Rad51B protein; n=2; Ostreococcus|Rep:
Rad51B protein - Ostreococcus tauri
Length = 618
Score = 68.5 bits (160), Expect = 2e-10
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 39/229 (17%)
Frame = -2
Query: 716 CKIS-TGCSKIDDILGGGFRTGTINEIFGESGSGKT----QLVLYTSIHNLPKCSVYICT 552
C I+ T C ID L GG RT I E+ GESG+GKT QL L+ + +L +VY+ T
Sbjct: 332 CSIARTRCDAIDAALRGGVRTRQITEVCGESGTGKTHLCAQLALFAQL-DLGGSTVYVHT 390
Query: 551 EDLFPA---KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQ-----LPKLLQQ 396
E P +R +++ D +E + K L ++ + +L+
Sbjct: 391 EGRAPTDVMRRMTTTRRFVEAFGGDARARGALERVYAVKSLGDADGLRETLEGVSAVLRS 450
Query: 395 NI-----VSLIVIDSIAAPFRVE----STDYVQRAGELRELAIMLITLAQQYNIAIV--- 252
I V LIV+DS APFR +T +RAG L ++ ++L A +++A+V
Sbjct: 451 PIDVRAPVRLIVVDSATAPFRDADGGGATYAARRAGTLHKMTMLLKEYASVHDLAVVVTN 510
Query: 251 ----------CINQVTASFADSDS----IHPALGLAWSNMVSTRLRISK 147
C+ + +F D+ PALGL W+N V+TRL +++
Sbjct: 511 HVVDVVQAGECVGGLGRAFMGLDTSGRRAQPALGLMWANCVNTRLFLTR 559
>UniRef50_A5DET9 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 504
Score = 68.5 bits (160), Expect = 2e-10
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL----PKCSVYICTEDL 543
+STG +D L GG + G I EIFG SG+GK+QL+L SI+++ SVYI TE +
Sbjct: 89 VSTGIESLDQRLNGGAKVGDITEIFGASGTGKSQLLLQMSINSVKLHESSKSVYISTESV 148
Query: 542 FPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQ-QNIVSLIVIDS 366
R ++ ++ +N+ + S+ + + QLP LL + V L+VIDS
Sbjct: 149 IATSRLEEMAG--RNAAPHIMENIMSVYCSDLEHQDHILYTQLPALLDLEKNVHLVVIDS 206
Query: 365 IAAPFR 348
I+ R
Sbjct: 207 ISHHLR 212
>UniRef50_Q9HJD3 Cluster: DNA repair and recombination protein radB;
n=5; Thermoplasmatales|Rep: DNA repair and recombination
protein radB - Thermoplasma acidophilum
Length = 229
Score = 68.5 bits (160), Expect = 2e-10
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 4/193 (2%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYICTEDLF 540
+I TG ID +L GG G I EIFGE GSGKT + + S + + +YI +E L
Sbjct: 12 RIQTGVGCIDALLNGGLEGGIITEIFGEGGSGKTNICMIASCSAMSQGLKVIYIDSEGLS 71
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQN-IVSLIVIDSI 363
P +RF + S S + + + D + I M+ K+ ++ + +IV+DS
Sbjct: 72 P-ERFLAVCRSDISMFKLF-------RVYSLDDQEVAI-MKASKMADRDQKIGMIVLDSF 122
Query: 362 AAPFRVESTDYVQ-RAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIHPALGLA 186
+ FR+E +D Q R E + +L ++A + NI ++ NQ+ D+ ++ P G
Sbjct: 123 SEFFRLEKSDDRQARIAEFQRQLSLLSSVAAKKNIPVLITNQIYQDI-DNGTLLPFGGFL 181
Query: 185 WSNMVSTRLRISK 147
+ + LRI K
Sbjct: 182 VDHAMKAILRIEK 194
>UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111;
Eukaryota|Rep: DNA repair protein RAD51 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 400
Score = 68.1 bits (159), Expect = 2e-10
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 12/182 (6%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------KCSVYI 558
++TG +D +LGGG TG+I E+FGE +GK+QL ++ +P KC +YI
Sbjct: 160 LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKC-LYI 218
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI 378
TE F R I D NV A D Q + +++ ++ SLI
Sbjct: 219 DTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA-DHQLRLLDAAAQMMSESRFSLI 277
Query: 377 VIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSI 207
V+DS+ A +R + + + R L + L LA Q+ +A+V NQV A +
Sbjct: 278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAF 337
Query: 206 HP 201
+P
Sbjct: 338 NP 339
>UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1
homolog; n=111; Eukaryota|Rep: Meiotic recombination
protein DMC1 homolog - Glycine max (Soybean)
Length = 345
Score = 67.7 bits (158), Expect = 3e-10
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 15/204 (7%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--------LYTSIHNLPKCSVYI 558
+I+TG +D++LGGG T I E FGE SGKTQL L T++ YI
Sbjct: 108 RITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYI 167
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI 378
TE F R I N+ + + Q+ + + L + + L+
Sbjct: 168 DTEGTFRPDRIVPIAERFGMDPGAVLDNIIYAR-AYTYEHQYNLLLGLAAKMSEEPFRLL 226
Query: 377 VIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFAD---- 219
++DS+ A FRV+ + + R +L ++ LI +A+++N+A+ NQV +
Sbjct: 227 IVDSVIALFRVDFSGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVISDPGGGVFV 286
Query: 218 SDSIHPALGLAWSNMVSTRLRISK 147
+D PA G ++ + RL K
Sbjct: 287 TDPKKPAGGHVLAHAATVRLMFRK 310
>UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1,
putative; n=2; Ostreococcus|Rep: Meiotic recombination
protein DMC1, putative - Ostreococcus tauri
Length = 371
Score = 67.3 bits (157), Expect = 4e-10
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLP-----KCS--VYIC 555
I+ G + +D IL GGF T I EIFGE GKTQ+ ++ +P CS +I
Sbjct: 135 ITCGAAAVDAILNGGFETRAITEIFGEWRCGKTQICHTLAVTTQMPIEMGGGCSKVAWID 194
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIV 375
TE+ F + R I + NV V + + + + + + + L++
Sbjct: 195 TENTFRSDRLEAIADRFGLDRDAVLSNVMVARVDTVDQMMQAL-IAIGAKMAEEPFKLLI 253
Query: 374 IDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA-----SFAD 219
+DSI A FRV+ + +R L + L LA+++N+A+V NQV + +FA
Sbjct: 254 VDSIMAIFRVDYVARGELSERQQTLNQFLSRLRKLAEEFNVAVVLTNQVQSDPGGMAFAG 313
Query: 218 SDSIHPALGLAWSNMVSTRLRISK 147
+ P G ++ + RL++ K
Sbjct: 314 VEPKKPIGGHVLAHASTIRLQVRK 337
>UniRef50_A7AT31 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 274
Score = 67.3 bits (157), Expect = 4e-10
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 30/222 (13%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--------VYIC 555
IS G ++IDD LG G + EI+GESGSGKTQ+ L L + +Y
Sbjct: 13 ISLGITEIDDALGDCLLLGMLTEIYGESGSGKTQVALTLVAEELVRMQEADSNDVMLYFQ 72
Query: 554 TEDLFPAKRFNQIM-NSIKSRDQDY-----GKNVFVEHISEAKDLQFCIRMQLPKLLQQN 393
T FP +RF I+ + KS++ + G +H+ + + + ++ + L +
Sbjct: 73 TSRAFPMQRFCDIIEHKRKSKNSRFKGAPLGPREIAKHLRIYRPSEPTLFLEELRNLHAD 132
Query: 392 I-----VSLIVIDSIAAPFR--VESTDYVQRA-GELRELAIMLITLAQQYNIAIVCINQV 237
+ + LIVIDSIA F +E D + L +A +L LA Q N I+ IN+
Sbjct: 133 VGASYHIRLIVIDSIACLFGDCMEDKDADNASMNTLLNVASILKRLAHQKNALILLINEA 192
Query: 236 TASFADSDS--------IHPALGLAWSNMVSTRLRISKTTQS 135
A D+ + + PALG WS ++ R+ I S
Sbjct: 193 IAGNLDASAGTGMTHTLVTPALGDLWSQAINCRILIEAIRSS 234
>UniRef50_Q49593 Cluster: DNA repair and recombination protein radA;
n=11; Archaea|Rep: DNA repair and recombination protein
radA - Methanococcus jannaschii
Length = 352
Score = 67.3 bits (157), Expect = 4e-10
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV------------------LYTSI 588
K+STG +D+ILGGG + ++ E G GSGKTQ+ + I
Sbjct: 110 KLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEI 169
Query: 587 HNLPKCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPK 408
N PK +VYI TE F +R Q+ ++ + N+FV + D+Q +
Sbjct: 170 LNEPK-AVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNS-DMQMLYAENVEN 227
Query: 407 LLQQ-NIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLIT---LAQQYNIAIVCINQ 240
L+++ + + L+++DS+ + FR E + A ++L + T LA YN ++ NQ
Sbjct: 228 LIREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNKLADIYNCVVIVTNQ 287
Query: 239 VTA 231
V A
Sbjct: 288 VAA 290
>UniRef50_A4S5M9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 288
Score = 66.1 bits (154), Expect = 9e-10
Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL--YTSIHNLPKCSVYICTEDLFP 537
+ TGC ID++LGGG R G + EI G S SGKTQL L S L VY+ T F
Sbjct: 41 LPTGCDAIDELLGGGLRQGQLIEITGPSASGKTQLCLSAAASFAALDNRVVYVDTTGGFS 100
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDL--------QFCIRMQLPKL-------- 405
A R Q+ + D + K V EH+ + +L F + L +L
Sbjct: 101 ATRIKQLHRGFFAEDAE--KAVVEEHLDKTLNLIAVHKCHDVFSLLTLLSQLGEEASEDD 158
Query: 404 --LQQNIVSLIVIDSIAAPFRVESTD-YVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
++ + L+VIDS++A T + Q + +A ML LA A + N
Sbjct: 159 NNPERATMGLLVIDSLSALLSPLLTKAHHQGYTIMATVAAMLRGLATTRKTAALYTNHTV 218
Query: 233 ASFADS------DSIHPALGLAWSNMVSTRLRISK 147
++ DS ++ PALG W+ + R+R+SK
Sbjct: 219 SAGQDSLADDHGSNLKPALGTRWTAVPHRRIRLSK 253
>UniRef50_A7ATP8 Cluster: Rad51 protein, putative; n=1; Babesia
bovis|Rep: Rad51 protein, putative - Babesia bovis
Length = 346
Score = 65.3 bits (152), Expect = 2e-09
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLP--------KCSVY 561
K +TG + +D +L GG +G+I EI G+ +GKTQL +I LP KC ++
Sbjct: 104 KFTTGSTALDALLQGGIESGSITEIIGDFSTGKTQLCHTLAITSQLPIEQNGGEGKC-LW 162
Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
I T++ F +R I N + N+ +S + QF + ++ + Q+ ++
Sbjct: 163 IDTQNSFRPERLGPIANRFGLSHAECVANIVYVKVSNTEQ-QFDMLVEAAHYMAQSRFAM 221
Query: 380 IVIDSIAAPFRVESTDYVQRAGEL--RELAI-----MLITLAQQYNIAIVCINQVTA--- 231
+++DS A +R TDY R GEL R++++ L LA Y +A+V NQV A
Sbjct: 222 LIVDSATALYR---TDYTGR-GELAARQMSLGKYFRALKRLADIYGVAVVVTNQVMARVD 277
Query: 230 ---SFADSDSIHPALGLAWSNMVSTRLRISK 147
SF + P G + TRL + K
Sbjct: 278 NMSSFMGGNDKVPVGGHVVAQNTQTRLFLRK 308
>UniRef50_Q8PZN5 Cluster: DNA repair and recombination protein radA;
n=21; Archaea|Rep: DNA repair and recombination protein
radA - Methanosarcina mazei (Methanosarcina frisia)
Length = 325
Score = 65.3 bits (152), Expect = 2e-09
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYI 558
K++TGC++ D+++GGG T I E++GE GSGKTQ+ +++ L + I
Sbjct: 81 KLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVIII 140
Query: 557 CTEDLFPAKRFNQIMNSIKSR-DQDYGKNVFVE--HISEAKDLQFCI-----RMQLPKLL 402
TE+ F +R Q++N + + + F++ H++ A + I + L L
Sbjct: 141 DTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLANEL 200
Query: 401 QQ--NIVSLIVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
++ V L+++DS+ A FR E R +L + L+ +N +V NQV
Sbjct: 201 KEMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHMHGLLRFGDLFNACVVVTNQV 260
Query: 236 TA 231
A
Sbjct: 261 MA 262
>UniRef50_Q2FSR3 Cluster: ATPase; n=4; Methanomicrobiales|Rep:
ATPase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 234
Score = 64.9 bits (151), Expect = 2e-09
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLFP 537
+S+G + +DD++G G+ I +IFGE GSGK+ L L ++ L + VY TE F
Sbjct: 6 VSSGNAALDDLMGTGYPRKMITQIFGEPGSGKSSLCLMAAVSVLKQGESVVYFDTES-FS 64
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
A+RF+QI + D +F+ + Q + ++ ++++ +I++DS
Sbjct: 65 AERFSQIAGDEAATLAD---RLFLYEPVDFNQ-QALMILESEDVIREQKAGIIILDSATG 120
Query: 356 PFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSD 213
+R E + + ML+ A++Y+I ++ NQV + D
Sbjct: 121 LYRTELEHIQEALQKFNRQMTMLLGYAKRYDIPVLISNQVYMDISRGD 168
>UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n=1;
Bigelowiella natans|Rep: DNA recombination and repair
protein - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 331
Score = 64.5 bits (150), Expect = 3e-09
Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ----LVLYTSIHNL----PKCSVYIC 555
IST ID++L GG + ++ EIFGES +GKTQ L + + N K +YI
Sbjct: 93 ISTLNKTIDNLLEGGIESSSVTEIFGESKTGKTQFCHILCVSAMVDNYSFVQTKKVIYID 152
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIV 375
TE F +R +I K NVF + QF + + + + V+LI+
Sbjct: 153 TEGNFRPERLIEISEKFKINFDFLINNVFYARAFNTEH-QFQLLVAAASITAFSNVALII 211
Query: 374 IDSIAAPFRVESTDYVQRAGE--LRELAI-----MLITLAQQYNIAIVCINQVTAS---- 228
+DS A R T+YV R GE LR+ + + L ++ NIAI+ NQV S
Sbjct: 212 VDSCTALLR---TEYVGR-GELFLRQTLLGKFLRNIQRLGEECNIAILLTNQVVTSNLDG 267
Query: 227 --FADSDSIHPALGLAWSNMVSTRLRISKTT 141
F+ + ++ P G ++ +TR+ + K T
Sbjct: 268 MTFSAASNLKPIGGHIMAHYTNTRIWLKKRT 298
>UniRef50_O93748 Cluster: DNA repair and recombination protein radA;
n=2; Thermoprotei|Rep: DNA repair and recombination
protein radA - Cenarchaeum symbiosum
Length = 398
Score = 64.5 bits (150), Expect = 3e-09
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKCS-------VYIC 555
I+TG +D +LGGG T I E+FGE GSGKTQ + PK +YI
Sbjct: 89 ITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMYID 148
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEA--KDLQFCIRMQLPKLLQQNIVSL 381
TE F +R ++ K+ + D K + ++ A Q I + K +Q+ + L
Sbjct: 149 TEGTFRPER---VVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQEENIKL 205
Query: 380 IVIDSIAAPFRVE---STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTAS 228
I+ DS FR E R +L +L +A+ YN A++ NQV++S
Sbjct: 206 IISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSS 259
>UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=22;
Eukaryota|Rep: DNA repair protein RAD51 homolog 1 - Homo
sapiens (Human)
Length = 339
Score = 64.5 bits (150), Expect = 3e-09
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP-------KCSVYI 558
+I+TG ++D +L GG TG+I E+FGE +GKTQ+ ++ LP ++YI
Sbjct: 101 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI 160
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI 378
TE F +R + D NV D Q + Q ++ ++ +L+
Sbjct: 161 DTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT-DHQTQLLYQASAMMVESRYALL 219
Query: 377 VIDSIAAPFRVESTDYVQRAGEL--RELAI-----MLITLAQQYNIAIVCINQVTA 231
++DS A +R TDY R GEL R++ + ML+ LA ++ +A+V NQV A
Sbjct: 220 IVDSATALYR---TDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 271
>UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM15
homolog; n=36; Fungi/Metazoa group|Rep: Meiotic
recombination protein DMC1/LIM15 homolog - Homo sapiens
(Human)
Length = 340
Score = 63.7 bits (148), Expect = 5e-09
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKCS-------VYIC 555
I+TG + D +LGGG + I E FGE +GKTQL + LP ++I
Sbjct: 101 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 160
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQ-NIVSLI 378
TE+ F R I + NV ++ + K ++ I L+
Sbjct: 161 TENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLL 220
Query: 377 VIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
+IDSI A FRV+ + + +R +L ++ L ++++YN+A+ NQ+TA
Sbjct: 221 IIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 272
>UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like 3;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
RAD51-like 3 - Tribolium castaneum
Length = 339
Score = 61.7 bits (143), Expect = 2e-08
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 13/224 (5%)
Frame = -2
Query: 737 RELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL---PKCS 567
+ +L I TG +D +L GG TG I E+ G SGKT VL T I N+ +
Sbjct: 99 KNVLKNTAIIPTGIKGVDQLLNGGLFTGNIYELCGPPASGKTHFVL-TLIKNVILNMDQN 157
Query: 566 VYIC-TEDLFPAKRFNQIMNSIKS--RDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQ 396
V+I T++ F A + Q++ + R + GK + V DL + ++ L+
Sbjct: 158 VHIFDTKNDFSAVKMKQMLKNCDEDRRTKSLGK-IIVNRCYTRYDLINSL-YEIKNDLEN 215
Query: 395 NI-VSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT----A 231
N+ + LI++DS+ + S D++ L +A ++ +A ++++A + N +T
Sbjct: 216 NMKLRLIIVDSLPGVI-LNSNDHLTNNLYLNHIANIMRYIATEHHVAFLVTNLITTWTDG 274
Query: 230 SFADSDSIHPAL--GLAWSNMVSTRLRISKTTQSVIIDDSGVCK 105
F + G WS++ +TRLRI K +++SG CK
Sbjct: 275 GFKTQQETSETITCGKYWSSVPNTRLRIEK------MENSGGCK 312
>UniRef50_Q9P6E6 Cluster: Related to RAD57 protein; n=2; Neurospora
crassa|Rep: Related to RAD57 protein - Neurospora crassa
Length = 510
Score = 61.7 bits (143), Expect = 2e-08
Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 45/207 (21%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ--LVLYTSI-----HNLPKCSVYICT 552
IST ID LGGG G + EI GESG+GKTQ L L S+ H L + ++YI T
Sbjct: 107 ISTLDPDIDRALGGGIPAGYVTEITGESGAGKTQFLLTLLLSVQLPPPHGLGRPALYIST 166
Query: 551 EDLFPAKRFNQIMNS---IKSRDQDYGK-----------------NVFVEHISEAKDLQF 432
E +R Q++ + D + G+ N+ + +
Sbjct: 167 EAPLSTRRLAQMLTTNPFYADLDSESGRGGEGGGGGGGGKRPSLDNIISTVTPDLESQDH 226
Query: 431 CIRMQLPKLLQQNIVSLIVIDSIAAPFRVE------------------STDYVQRAGELR 306
+ Q+P +++ + L+V+DS+AA +R E S++ R EL
Sbjct: 227 ILTYQVPVEIERRNIGLLVLDSVAANYRAEFDRSSKEAATSSSTPGARSSNMGARTAELV 286
Query: 305 ELAIMLITLAQQYNIAIVCINQVTASF 225
L + L LAQ+YN+A+V NQV F
Sbjct: 287 RLGMQLRDLAQKYNLAVVVSNQVADRF 313
>UniRef50_A1RY65 Cluster: Rad51-like; n=1; Thermofilum pendens Hrk
5|Rep: Rad51-like - Thermofilum pendens (strain Hrk 5)
Length = 250
Score = 60.9 bits (141), Expect = 3e-08
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 8/205 (3%)
Frame = -2
Query: 737 RELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK---- 573
R + ++ +ISTG +DD+L GG G+I E GE G+GKTQ+ S+ LPK
Sbjct: 21 RRVYEESARISTGVRSLDDLLEGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGG 80
Query: 572 ---CSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLL 402
++Y+ TE F +R QI + + +N+ L+ + L +++
Sbjct: 81 LNARALYVDTEGTFRPERIVQIARARGLDPEKTLENIIYARAYSLGGLEELLSKALAEVV 140
Query: 401 QQNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFA 222
+ + V L+V+D R +RA + L +A+ A+V QV
Sbjct: 141 KGD-VGLVVLDEATRLVRASGLGAGERARAYAAIVSSLEAVAEA-GSAVVVARQVVF--- 195
Query: 221 DSDSIHPALGLAWSNMVSTRLRISK 147
D + PA G A + +SK
Sbjct: 196 -GDGVRPAGGAALDGYAHLSVFLSK 219
>UniRef50_Q7ZTX4 Cluster: Zgc:56581; n=6; Euteleostomi|Rep:
Zgc:56581 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 373
Score = 58.8 bits (136), Expect = 1e-07
Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 40/223 (17%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKC-------SVYICT 552
ST +D +L GG G + E+ G SG GKTQL + S+ LPK +YI T
Sbjct: 80 STSLPALDRLLHGGLPRGALTEVTGPSGCGKTQLCMMLSVLATLPKSLGGLDSGVIYIDT 139
Query: 551 EDLFPAKRFNQIMN-------SIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQN 393
E F A+R ++ S+K R + V H+ Q ++ +L +L +
Sbjct: 140 ESAFSAERLVEMAQSRFPEFFSVKERLLEMAARV---HLFRELTCQDVLK-RLERLEEDI 195
Query: 392 I---VSLIVIDSIAAPFRVE-----STDYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
I L+++DS+A+ R E + R+ L + A +L L+Q++ I +V NQ+
Sbjct: 196 IACRAGLVILDSVASVVRKEFDTSLPGNLTHRSNFLGQEAAVLKYLSQEFCIPVVLTNQI 255
Query: 236 T----------------ASF-ADSDSIHPALGLAWSNMVSTRL 159
T ASF DS + ALG WS+ V+TRL
Sbjct: 256 TTHVGEKLHCPQWNQTDASFEEDSGFVTAALGNTWSHSVNTRL 298
>UniRef50_A7DQP6 Cluster: RecA/RadA recombinase-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: RecA/RadA
recombinase-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 217
Score = 58.4 bits (135), Expect = 2e-07
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLFP 537
ISTG K+D L GG G I +IFG++G+GKTQL+L +I+++ K +Y T F
Sbjct: 2 ISTGLEKLDKSLFGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDTTGGFR 61
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
+R I +S+ D+ + V ++ + ++ K +++N SLIVID+I
Sbjct: 62 PERILDIQKESESQ-SDFLNQITVSRLTNTSE-----QINSIKNIERNF-SLIVIDNITD 114
Query: 356 PFRVE 342
F E
Sbjct: 115 LFSYE 119
>UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD57 - Candida albicans (Yeast)
Length = 511
Score = 58.0 bits (134), Expect = 2e-07
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK-----CSVYICTED 546
ISTG ID LGGG G + EIFG SG GK+ L+ + N K ++YI TE
Sbjct: 85 ISTGLPSIDRELGGGIPIGEVTEIFGASGCGKSHF-LFQLLSNCGKEFSTSKNIYISTES 143
Query: 545 LFPAKRFNQIMNSIKSR-DQDYGKNVFVEHISEAKDLQFCIRMQLPKLL--QQNIVSLIV 375
KR + S D D + ++ + + + + QLP L + L+V
Sbjct: 144 FLETKRLKDFIGRNSSNIDTDLDRISYI-YCQDLESQDHILFTQLPLKLDSDKGKTKLLV 202
Query: 374 IDSIAAPFRVESTDYVQRAGELRE 303
+DSIA FR E D + + L+E
Sbjct: 203 LDSIAQHFRRE--DSIMNSTYLKE 224
>UniRef50_O27728 Cluster: DNA repair and recombination protein radB;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: DNA repair and recombination protein radB -
Methanobacterium thermoautotrophicum
Length = 234
Score = 58.0 bits (134), Expect = 2e-07
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 3/171 (1%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL--PKCSVYICTE 549
+N +I T S ID ILGGG TI + +G GSGKT + + ++ K +V+I TE
Sbjct: 9 ENRRIPTE-SSIDRILGGGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTVFIDTE 67
Query: 548 DLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKL-LQQNIVSLIVI 372
+R Q+ I R D ++ V S + ++ L + L+V+
Sbjct: 68 GGLSVERIRQVSGDIFDRVAD---SIIVFEPSSFTEQGEALQRTFSFLKTHGDSTDLVVL 124
Query: 371 DSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFAD 219
DS A +R++ + +L +L+ +A+++++A V NQ+ + D
Sbjct: 125 DSAVALYRLKEGNASSFNLDLGRQMFLLLQMARRFDLAAVITNQIYSITGD 175
>UniRef50_Q2GW05 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 476
Score = 57.6 bits (133), Expect = 3e-07
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 552
IST +D LGGG G + E+ GESG+GKTQ +L + H L + ++YI T
Sbjct: 127 ISTLDPDLDRALGGGIPAGYVTEVTGESGAGKTQFLLSLLLAAQLPPPHGLSRPALYIST 186
Query: 551 EDLFPAKRFNQIMNS------IKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNI 390
E +R Q++ + + + N+ + + + Q+P +++
Sbjct: 187 EAPLSTRRLAQMLTANPHFQRLPPSQRPSLDNIISTVTPDLESQDHILNFQVPVEVERRG 246
Query: 389 VSLIVIDSIAAPFRVESTDYVQ 324
+ LIV+DS+AA +R +++ ++
Sbjct: 247 IGLIVLDSVAANYRADTSTSIR 268
>UniRef50_Q6BWA8 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57 DNA repair protein; n=1;
Debaryomyces hansenii|Rep: Similar to sp|P25301
Saccharomyces cerevisiae YDR004w RAD57 DNA repair
protein - Debaryomyces hansenii (Yeast) (Torulaspora
hansenii)
Length = 569
Score = 57.2 bits (132), Expect = 4e-07
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL----YTSIHNLPKCS--VYICTE 549
I TG +D L GG G I EIFG SG GK+QL+L YT + P+ + +YI TE
Sbjct: 97 IPTGLEALDRQLNGGIPLGEITEIFGASGCGKSQLLLQLCIYTQLVGDPENNQCIYISTE 156
Query: 548 DLFPAKRFNQIMN--SIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQ--NIVSL 381
+R + +++ + KS + N+ + + ++ + QLP L Q V
Sbjct: 157 SPLETRRLHDMIDHYNAKSDKKVLMDNISCIYCQDIENQDHTLFTQLPVKLSQEKGKVRA 216
Query: 380 IVIDSIAAPFRVE 342
I+IDSI+ R+E
Sbjct: 217 IIIDSISHHLRLE 229
>UniRef50_A1RYZ3 Cluster: Rad51-like; n=1; Thermofilum pendens Hrk
5|Rep: Rad51-like - Thermofilum pendens (strain Hrk 5)
Length = 315
Score = 57.2 bits (132), Expect = 4e-07
Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKCS-------VYIC 555
++TG +D++L GG T I E GE GSGKTQL S+ LP VY+
Sbjct: 85 LTTGVKALDELLEGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQLPPSRGGLGGKVVYVD 144
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIV 375
TE F R +I G V+V +L+ + L LL+ V L+V
Sbjct: 145 TEGTFSPSRIERIAERFGVEGALEG--VYVARPISVDELEELVIKGLKPLLKGG-VKLVV 201
Query: 374 IDSIAAPFRVESTD---YVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
IDS+ A +R + R + L LA+ Y+I +V NQV +
Sbjct: 202 IDSVIALYRAQFRGREWLAMRQQRINYALDWLKRLARVYSIVVVITNQVVS 252
>UniRef50_Q657A2 Cluster: DNA repair protein radA (RadA)-like; n=3;
Oryza sativa|Rep: DNA repair protein radA (RadA)-like -
Oryza sativa subsp. japonica (Rice)
Length = 309
Score = 56.8 bits (131), Expect = 5e-07
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Frame = -2
Query: 437 QFCIRMQLPKLL-QQNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNI 261
Q + L K L + V +++IDS+ FR + D R L L++ L+ L++ YN+
Sbjct: 168 QIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDMALRTRVLSGLSLKLMKLSKAYNL 227
Query: 260 AIVCINQVTASFAD-SDSIHPALGLAWSNMVSTRL 159
A+V +NQVT F + S + ALG +WS+ + RL
Sbjct: 228 AVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRL 262
>UniRef50_A4S2Y8 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 351
Score = 55.6 bits (128), Expect = 1e-06
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)
Frame = -2
Query: 689 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSV--------YICTEDLFPA 534
+D LGGG R G + E+ G +G+GKTQL L V Y+ E F
Sbjct: 87 VDKALGGGLRVGAVTEVVGAAGAGKTQLCLAACASAAAPARVGGRDGGVIYVDAERKFSG 146
Query: 533 KRFNQIMNSI---KSRDQD----YGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIV 375
R +I D++ + V V + DL + L + + + V L++
Sbjct: 147 ARLAEIAREKFPGAFEDEESVHALARRVHVVTPTSLTDLNKRLD-ALEEAIIDHKVRLVI 205
Query: 374 IDSIAAPFRVE--STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT---ASFA---- 222
IDSIA R E VQR L +A L A+++ +A++ +NQVT +FA
Sbjct: 206 IDSIAHLARAEFGREKVVQRQSALGAVASTLKRHAEKHALAVLAVNQVTTKIGTFARHAS 265
Query: 221 --------DSDSIHPALGLAWSNMVSTRLRI 153
+S I ALG W++ V+TR+ +
Sbjct: 266 DGGDDVADESSGITAALGTKWAHCVNTRIAL 296
>UniRef50_Q4SEP3 Cluster: Chromosome undetermined SCAF14615, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF14615, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 332
Score = 54.0 bits (124), Expect = 4e-06
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Frame = -2
Query: 734 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH---NLPKCSV 564
ELL +S+G +D +L GF TG I E+ G GSGK+Q+ ++H +L + V
Sbjct: 74 ELLSSTAILSSGNPSLDKLLDSGFYTGEITELSGGPGSGKSQVCFAAAVHISLHLKQSVV 133
Query: 563 YICTEDLFPAKRFNQIMNSIKS-RDQDYG--KNVFVEHISEAKDLQFCIRMQLPKLLQQ- 396
++ T A R Q++ + S RD+ + + V + + L C+ LQQ
Sbjct: 134 FVDTTGGLTAGRLLQMLEAESSKRDEQMEALQRIHVFRLFDVFSLLDCLYALRAGTLQQV 193
Query: 395 ----NIVSLIVIDSIAAPFR-VESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
V +++DS++A V + + ++ +L T+A+ +NIA + +V+A
Sbjct: 194 SVGGGSVKAVIVDSVSAVIAPVLGGKQNEGMSLMTQVGGVLKTIAKDFNIA--ALVRVSA 251
Query: 230 SFA 222
++A
Sbjct: 252 TWA 254
>UniRef50_Q24DN8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 318
Score = 53.6 bits (123), Expect = 5e-06
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
Frame = -2
Query: 737 RELLVKNCKIST---GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS 567
+ELL K + G ++DD+L GG + G + E+ G SGK+ L N KC+
Sbjct: 71 KELLKKQQNLQNLTFGEKELDDLLEGGLQIGKVYELSGYPCSGKSILAQKLISQNF-KCN 129
Query: 566 V----YICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDL--QFCIRM-QLP- 411
Y+ + F KRF + M + ++ +++ K + + I +AK L CI M QL
Sbjct: 130 QKGAWYLDISNQFNLKRFLK-MYGLNAQKKEFEKCFYHQIIQDAKSLYISLCILMSQLSQ 188
Query: 410 -KLLQQNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCI 246
K Q+ ++L+VID+ A R + Y + + ++ ++ + +YN+ ++ I
Sbjct: 189 NKYYNQSKINLLVIDNFAMILR-KKEPYSEYLSYITQIINIIKQMCSEYNLTVLTI 243
>UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Rep:
Recombinase Rad51 - Plasmodium falciparum
Length = 350
Score = 53.2 bits (122), Expect = 7e-06
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 12/173 (6%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------KCSVY 561
K +TG ++D +L GG TG I E+FGE +GK+QL +I LP KC ++
Sbjct: 111 KFTTGSKQLDALLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKC-LW 169
Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
I TE F +R I D N+ D Q + + ++ +L
Sbjct: 170 IDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNC-DHQTELLIDASAMMADARFAL 228
Query: 380 IVIDSIAAPFRVE---STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
+++DS A +R E + R L L +A Y +A++ NQV A
Sbjct: 229 LIVDSATALYRSEYIGRGELANRQSHLCRFLRGLQRIADIYGVAVIITNQVVA 281
>UniRef50_Q8TWK1 Cluster: RadA recombinase; n=1; Methanopyrus
kandleri|Rep: RadA recombinase - Methanopyrus kandleri
Length = 316
Score = 53.2 bits (122), Expect = 7e-06
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLFP 537
I TG D+ +GGG TG I ++G G+GK+Q + H L + +YI TE+ F
Sbjct: 89 IPTGIQGFDERMGGGLPTGVIVGMYGPPGAGKSQFATQVAAHALKEGESVLYIDTENAFR 148
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQN---IVSLIVIDS 366
+R +I K ++ + I +A L+ + + + + ++VIDS
Sbjct: 149 PQRLLEIGGFKKDELKEVSDRFVLRRIIDAAALRQYFDEKEGEFISEAYELTPKVVVIDS 208
Query: 365 IAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASF-ADSDSIHPALGL 189
I+ PFR S + E + ++ +Y A + VT A+ D A G
Sbjct: 209 ISQPFRPYSAR--DKLPERSRMIAHILNTLLKYCTAYNALGMVTTHVQANPD----AWGK 262
Query: 188 AWSNMVSTRLR 156
W ++ T L+
Sbjct: 263 RWQDVAPTVLK 273
>UniRef50_Q8SZ30 Cluster: RE19845p; n=2; Sophophora|Rep: RE19845p -
Drosophila melanogaster (Fruit fly)
Length = 270
Score = 52.8 bits (121), Expect = 9e-06
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCSVYICTEDLFP 537
KI TG +D GGG G + E+ G SG+GKTQ+ L ++ +PK + + LF
Sbjct: 45 KILTGKKALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104
Query: 536 AKRF----NQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKL--LQQNIVS--- 384
R +++M ++ Y V K LQ ++ PKL L ++S
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHR--VPEFKAHKMLQKIHYVRCPKLDQLMATVLSCHR 162
Query: 383 ---------LIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
LIVIDS+A R+ D R L EL + L +Q+ + V N +T
Sbjct: 163 HLVDHPDIKLIVIDSLAFTLRM-LEDGAHRYEMLLELHESMRRLQRQHELTWVFTNVLTH 221
Query: 230 SFADSD-SIHPALGLAWSNMVSTRLRISKTTQ 138
+ + PALG S++++ R+ S +++
Sbjct: 222 RYVKQKFQVEPALGDLHSHLINERIWFSGSSE 253
>UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;
Pan troglodytes|Rep: PREDICTED: RAD51 homolog C - Pan
troglodytes
Length = 461
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = -2
Query: 392 IVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSD 213
+V L+++D IA PFR + D R L LA +I+LA + +A++ NQ+T +
Sbjct: 320 MVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQ 379
Query: 212 S-IHPALGLAWSNMVSTRL 159
+ + PALG +W + + RL
Sbjct: 380 ALLVPALGESWGHAATIRL 398
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCSVYICTEDLF 540
I T CS +DDILGGG EI G G GKTQL + ++ +P+C + E +F
Sbjct: 145 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVF 202
>UniRef50_O50248 Cluster: DNA repair and recombination protein radB;
n=6; Methanococcales|Rep: DNA repair and recombination
protein radB - Methanococcus maripaludis
Length = 216
Score = 52.4 bits (120), Expect = 1e-05
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 6/188 (3%)
Frame = -2
Query: 689 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLFPAKRFNQI 516
++++L G TI +I+G G GKT + + + + + K VYI TE +R Q+
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQL 61
Query: 515 MNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRVEST 336
S K D + KN+ + S ++ L K+ V LI+ID I + +R+E
Sbjct: 62 --SGKDCD-ELLKNIIIYEPSSFEEQS----EALEKIFLLENVGLIIIDGIVSLYRLELC 114
Query: 335 DYVQRAGELREL----AIMLITLAQQYNIAIVCINQVTASFADSDSIHPALGLAWSNMVS 168
D + +L + L+ +++Q N I+ NQV S + I PA G
Sbjct: 115 DKINENTKLNRMLGKQISNLLKVSRQKNSGILITNQVKDSI---NGIEPAGGRLLEYWSK 171
Query: 167 TRLRISKT 144
+ ++I K+
Sbjct: 172 SIIKIEKS 179
>UniRef50_Q16EQ5 Cluster: Rad51A protein, putative; n=1; Aedes
aegypti|Rep: Rad51A protein, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 329
Score = 52.0 bits (119), Expect = 2e-05
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL--VLYTSIHNLPKCSV-YICTEDLF 540
+ TG +D +L GG G + EIFG+S SGKTQ+ + +I K V Y+ T+ F
Sbjct: 82 LKTGIRGLDLLLEGGLLPGHVMEIFGDSSSGKTQICVTMAANIARNHKFDVFYVDTKCDF 141
Query: 539 PAKRFNQIMNSIKSRDQDYGK---NVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVID 369
A+R ++I+ K Q+ + + VE I + L + L ++ +++ID
Sbjct: 142 FARRIHKILELNKCSVQEIQETMGRIKVERILSPESLIKTMEDLLIRVDDLKNFKVLIID 201
Query: 368 SIAAP-FRVEST-DYVQRAGELRELAIMLITLAQQYNIAIVCIN-QVTA--SFAD----- 219
S+ ++ ++T G L L +L LA + I+IV +N ++TA SF+
Sbjct: 202 SLPPLWYQYQNTKSRCYPLGMLTRLIGLLRKLATENLISIVLVNLKITAYDSFSTGGGGS 261
Query: 218 --------SDSIHPALGLAWSNMVSTRLRISK 147
+ + +PALG W +TR+ +SK
Sbjct: 262 RRAMANQRNSNEYPALGRFWETAPTTRILMSK 293
>UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DNA repair protein
RAD51C - Entamoeba histolytica HM-1:IMSS
Length = 283
Score = 51.6 bits (118), Expect = 2e-05
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 12/187 (6%)
Frame = -2
Query: 737 RELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--------IHN 582
+E V+N I T +ID L GG G I +I G GSGK+QL + + I
Sbjct: 33 KEKKVRN--IPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACNVQLPEEIGG 90
Query: 581 LPKCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV--FVE--HISEAKDLQFCIRMQL 414
L S+Y + F R ++ I + +Y NV +E H+ + D+ L
Sbjct: 91 LNSESIYYDSYSQFCISRVQRMAECICASYPEYKLNVKEILEKIHVYQPHDIVSLCSSLL 150
Query: 413 PKLLQQNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ N V +I+IDSI ++ + R L + +L + +Y +++V +N +T
Sbjct: 151 SINNKLNKVKVIIIDSIPTFYKKAMCNDTIRLAALHRIIQILSIYSNKYYLSVVIVNHLT 210
Query: 233 ASFADSD 213
+S+
Sbjct: 211 TKKINSN 217
>UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:
ENSANGP00000029732 - Anopheles gambiae str. PEST
Length = 290
Score = 51.6 bits (118), Expect = 2e-05
Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYICTE 549
T C +D LG G G I E+ G GSGKTQL L +++ L +VY+ T
Sbjct: 21 TFCRDLDLALGSGIPEGMITELCGPPGSGKTQLCLQLAVNVQIPQQLGGLQGRAVYLDTN 80
Query: 548 DLFPAKRFNQ-------------IMNSIKSRDQDYG-------KNVFVEHISEAKDLQFC 429
F +R + +++ + + G N+ H++ +
Sbjct: 81 YGFFPQRVQEMAKACHNHCANIALLHKLNPEETLAGFSEATALDNILYSHVTNCTQILEA 140
Query: 428 IRMQLPKLLQQNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVC 249
I + +L + LIV+DS++ R +T ++R + E+ +L LA ++ ++
Sbjct: 141 IAVLQNRLYDGEKIKLIVLDSLSFLIRNTNTRSMKRVKRVHEILTLLHKLAHRFGCVVIV 200
Query: 248 INQVTASFADSD----------SIHPALGLAWSNMVSTRLRISK 147
N VT +D D I PALG + ++ V+ R+ + +
Sbjct: 201 TNDVTTRISDVDGGGGERPDVPQIVPALGGSLTHKVNQRIFLGR 244
>UniRef50_Q4FY15 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 650
Score = 50.0 bits (114), Expect = 6e-05
Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Frame = -2
Query: 707 STGCSKIDDILGGG-FRTGTINEIFGESGSGKTQLVL 600
STGC +D LGGG FR+G + E++GE+G+GKTQL L
Sbjct: 282 STGCMGLDQALGGGGFRSGWVTEVYGEAGAGKTQLGL 318
>UniRef50_Q99131 Cluster: REC2 protein; n=1; Ustilago maydis|Rep:
REC2 protein - Ustilago maydis (Smut fungus)
Length = 781
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
S+G ++DD+LGGG R+ + E+ GESGSGKTQ+ +
Sbjct: 227 SSGSRELDDLLGGGVRSAVLTELVGESGSGKTQMAI 262
>UniRef50_P47581 Cluster: Protein recA; n=2; Mycoplasma|Rep: Protein
recA - Mycoplasma genitalium
Length = 340
Score = 48.8 bits (111), Expect = 1e-04
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Frame = -2
Query: 710 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVL--YTSIHNLPKCSVYICTE--- 549
ISTG +D+ LG GG G I E++G SGKT + L S K + YI E
Sbjct: 41 ISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAEGAL 100
Query: 548 DLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVID 369
DL AK +N + +G+N F + L++ N +SLIVID
Sbjct: 101 DLAYAKSIGIDLNKLLIAHPRHGENAFA---------------LIESLIKTNKISLIVID 145
Query: 368 SIAA 357
S+AA
Sbjct: 146 SVAA 149
>UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodium
yoelii yoelii|Rep: DNA repair protein rhp51 - Plasmodium
yoelii yoelii
Length = 365
Score = 48.4 bits (110), Expect = 2e-04
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 29/191 (15%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKCS------- 567
K KI+TG S +D LGGGF + +I E+FGE+ GKTQ+ ++ LPK
Sbjct: 105 KVLKITTGSSVLDKTLGGGFESMSITELFGENRCGKTQVCHTLAVTAQLPKSMQGGNGKV 164
Query: 566 VYICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFV------EHISE--AKDLQFCIRMQLP 411
YI TE F ++ +I +D N+ EH+ + A +
Sbjct: 165 CYIDTEGTFRPEKICKIAQRFGLNSEDVLDNILYARAFTHEHLYQLLATSAAKVVHTPAC 224
Query: 410 KLLQQNIVSLIVIDSIAAPFRVES------TDYVQRAGELRE-------LAIMLITLAQQ 270
LL +++ ++ + + + Y GEL E + +L L +Q
Sbjct: 225 ALLTYTLLTYALLTYALLTYTLLTYLLHFCERYFSGRGELSERQQKLNKIMSVLSKLGEQ 284
Query: 269 YNIAIVCINQV 237
+NIAIV NQV
Sbjct: 285 FNIAIVITNQV 295
>UniRef50_Q1JSB1 Cluster: Putative uncharacterized protein; n=1;
Toxoplasma gondii|Rep: Putative uncharacterized protein
- Toxoplasma gondii
Length = 481
Score = 47.6 bits (108), Expect = 3e-04
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Frame = -2
Query: 578 PKCSVYICTEDLFPAKRFNQIMNSIKSRDQ-----------DYGKNVFVEHISEAKDLQF 432
P + YI TE FP +R ++IM++ + R + + VF+E +S ++L
Sbjct: 189 PTAAFYIHTEGGFPVQRLHEIMSARRVRHECGFDSTVPAAKALMQRVFMEEVSTEEELWV 248
Query: 431 CIRMQLPKLLQQNIVSLIVIDSIAAPFRVEST 336
+ +LP+L V+LIVIDSIAA FR+ ++
Sbjct: 249 TLTRRLPRLFLSYRVALIVIDSIAAVFRLPAS 280
Score = 40.7 bits (91), Expect = 0.038
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 725 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+++C + GC +D L GG G + EI G++G GKTQ L
Sbjct: 92 LESCPLPVGCRAVDHHLNGGVPRGMLVEISGKAGCGKTQFAL 133
>UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6;
Magnoliophyta|Rep: DNA repair protein RAD51 homolog 2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 370
Score = 47.6 bits (108), Expect = 3e-04
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 16/183 (8%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYIC 555
+ T +DD L GG G + E+ G G GK+Q + ++ L +YI
Sbjct: 84 LPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYID 143
Query: 554 TEDLFPAKR--------FNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQ 399
E F ++R F ++ + +K Q+ + V + + I+ +L +
Sbjct: 144 VESKFSSRRVIEMGLESFPEVFH-LKGMAQEMAGRILVLRPTSLANFTESIQ-ELKNSIL 201
Query: 398 QNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFAD 219
QN V L+VIDS+ A E+ QR +L L +LA+ I IV NQV + D
Sbjct: 202 QNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRD 261
Query: 218 SDS 210
S
Sbjct: 262 ETS 264
>UniRef50_Q3JBH0 Cluster: KaiC; n=2; Chromatiales|Rep: KaiC -
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Length = 482
Score = 47.2 bits (107), Expect = 4e-04
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKT---QLVLYTSIHNLPKCSVYICTEDLFP 537
STG K+D ILGGG GTI+ I G SG+GK+ L + + K ++Y+ E++
Sbjct: 245 STGIEKLDKILGGGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEI-D 303
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
A SI ++ + +E + + L + + +++ V LIV+DSIA
Sbjct: 304 ALLHRASSLSIDLKNPLREGQIKLEQVEPLRYLTDEFATLVSQEVEEEGVELIVLDSIA 362
>UniRef50_Q4CWC1 Cluster: DNA repair protein, putative; n=3;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 453
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2
Query: 683 DILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 585
D GGFR G ++E++GE+GSGKTQLVL + +H
Sbjct: 170 DASDGGFRAGFVSEVYGEAGSGKTQLVLQSLLH 202
>UniRef50_Q386Q5 Cluster: Recombinase Rad51, putative; n=1;
Trypanosoma brucei|Rep: Recombinase Rad51, putative -
Trypanosoma brucei
Length = 507
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-------CSVYIC 555
++T C +D +LGGG + GT+ EI G G GKTQL + +++ LPK ++I
Sbjct: 106 VTTLCRSLDILLGGGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQGGCLFID 165
Query: 554 TEDLFPAKRFNQIMNS 507
TE F +RF +I ++
Sbjct: 166 TEGSFLPERFREIASA 181
>UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5;
Gammaproteobacteria|Rep: DNA repair protein RadA -
Psychromonas sp. CNPT3
Length = 472
Score = 46.8 bits (106), Expect = 6e-04
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL-YTSIHNLPKCSVYICTEDLFP 537
++STG S++D +LGGG G++ I G+ GSGKT L+ I + ++Y+ E+
Sbjct: 83 RVSTGLSELDRVLGGGITLGSVVLISGDPGSGKTTLLTKVAQIMSQTMVTLYVTAEESLS 142
Query: 536 --AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSI 363
AKR + + ++ + F+ +S+ CI + + L N V ++ DSI
Sbjct: 143 QWAKRATERLK------LNFNELNFL--LSDTD----CIEDIVNQCLDNN-VRFLIADSI 189
Query: 362 AAPFRVESTDYVQRA-GELRELAIMLITLAQQYNIAIVCINQV 237
A F S D +++ A +L L +Q+ I ++ + QV
Sbjct: 190 QA-FESNSVDGTAGGITQVKTCAKILNRLCKQHGITLILVGQV 231
>UniRef50_Q4E2R1 Cluster: DNA recombination and repair protein
RAD51, putative; n=1; Trypanosoma cruzi|Rep: DNA
recombination and repair protein RAD51, putative -
Trypanosoma cruzi
Length = 492
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-------CSVYI 558
+++T C ID +LGGG G ++E+ G G GKTQ+++ +++ LP+ ++I
Sbjct: 122 RVTTFCRGIDTLLGGGLPVGAVSEVCGAPGVGKTQMLMQLAVNCLLPRELGGLHGSCLFI 181
Query: 557 CTEDLFPAKRFNQIMNS 507
TE F +RF +I ++
Sbjct: 182 DTEGSFVPERFREIAHA 198
>UniRef50_A2DYQ0 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 288
Score = 46.8 bits (106), Expect = 6e-04
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -2
Query: 434 FCIRMQLPKLLQQ-NIVSLIVIDSIAAPFRVESTDYV-QRAGELRELAIMLITLAQQYNI 261
F + +PKL+ V LIVIDSIAAP R ++ + R L EL +L ++A I
Sbjct: 164 FSLTRTIPKLVNDIGNVGLIVIDSIAAPLRGQAVEMQGDRTSMLWELVKVLKSIAISKGI 223
Query: 260 AIVCINQVTASFADSDSIHPALGLAWSNMVSTRLRISKT 144
A++ N + S P+LG +WS+ + R+ I K+
Sbjct: 224 AVLITNHL--STVPFHGNVPSLGHSWSHACTHRVEIKKS 260
>UniRef50_Q31D48 Cluster: DNA repair protein RadA; n=5;
Prochlorococcus marinus|Rep: DNA repair protein RadA -
Prochlorococcus marinus (strain MIT 9312)
Length = 449
Score = 46.4 bits (105), Expect = 8e-04
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCSVYICTED 546
K + ++G ++ D +LGGG G++ + GE G GK+ +VL ++ +L + +Y+ E
Sbjct: 63 KISRFTSGFNEFDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYVTAE- 121
Query: 545 LFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDS 366
+ + +K R + +N I +L I K +++ S +IDS
Sbjct: 122 --------ESLEQVKIRWERLNQNSIDLKIFAETNLSLII-----KEIKRVNPSFAIIDS 168
Query: 365 IAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
I A E ++RE + L LA+Q NIA++ I VT
Sbjct: 169 IQAIHNHEMESSPGSVSQVRECSSELQNLAKQNNIALLIIGHVT 212
>UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 294
Score = 46.4 bits (105), Expect = 8e-04
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
+++TG ++D IL GG TG+I EI+GE SGKTQL
Sbjct: 95 QVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQL 130
>UniRef50_Q9HMM4 Cluster: DNA repair and recombination protein radA;
n=160; Halobacteriaceae|Rep: DNA repair and
recombination protein radA - Halobacterium salinarium
(Halobacterium halobium)
Length = 343
Score = 46.4 bits (105), Expect = 8e-04
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--------LYTSIHNLPKCSVYI 558
K++ ++DD+LGGG T +I E++GE G+GK+Q+ L T L +V+I
Sbjct: 81 KLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAVFI 140
Query: 557 CTEDLFPAKRFNQIMNSI 504
+ED F +R + ++ +
Sbjct: 141 DSEDTFRPERIDDMVRGL 158
>UniRef50_Q8KD59 Cluster: DNA repair protein RadA; n=10;
Chlorobiaceae|Rep: DNA repair protein RadA - Chlorobium
tepidum
Length = 456
Score = 46.0 bits (104), Expect = 0.001
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKRF 525
TG ++D +LGGG + + GE G GK+ L+L K +Y+ E+ R
Sbjct: 73 TGIGELDRVLGGGLMEASAILVGGEPGIGKSTLMLQLVPRLAGKKVLYVAGEESPNQIRE 132
Query: 524 NQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRV 345
SIK+ + V +E I +A I + P+ ++++DSI V
Sbjct: 133 RARRLSIKAPNLRLVSEVALERILDA------IANEQPE--------MVIVDSIQT---V 175
Query: 344 ESTDYVQRAG---ELRELAIMLITLAQQYNIAIVCINQVT 234
S+DY AG ++RE A LI A++ N ++ I +T
Sbjct: 176 YSSDYQSSAGTITQIRECAASLIRAAKEQNFILLIIGHIT 215
>UniRef50_Q4UAC7 Cluster: Meiotic recombination (DMC1-like) protein,
putative; n=1; Theileria annulata|Rep: Meiotic
recombination (DMC1-like) protein, putative - Theileria
annulata
Length = 409
Score = 46.0 bits (104), Expect = 0.001
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = -2
Query: 476 NVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRVEST---DYVQRAGELR 306
N+F + L F I K++++ V L++IDSI + FR++ + + +R +L
Sbjct: 225 NIFYSKAYTHEHLLFLINNITTKMVEERFV-LLIIDSIISLFRIDYSGRGELAERQQKLN 283
Query: 305 ELAIMLITLAQQYNIAIVCINQV 237
+L L+ +AQQ+NIAIV N V
Sbjct: 284 KLLSNLLKIAQQFNIAIVLTNHV 306
>UniRef50_Q5JET4 Cluster: DNA repair and recombination protein radA
[Contains: Pko radA intein]; n=12; Archaea|Rep: DNA
repair and recombination protein radA [Contains: Pko
radA intein] - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 836
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGK 615
KISTG +D +LGGG T I E+FGE GSGK
Sbjct: 117 KISTGSKALDKLLGGGIETQAITEVFGEFGSGK 149
Score = 37.9 bits (84), Expect = 0.27
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Frame = -2
Query: 566 VYICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNI- 390
++I TE+ F +R QI + ++ KN++V + Q + + +++++
Sbjct: 656 IWIDTENTFRPERIKQIAENRGLDPEETLKNIYVARAFNSNH-QMLLVEKAEEIIKEKAE 714
Query: 389 ----VSLIVIDSIAAPFRVESTD---YVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
V L+V+DS+ A FR E +R +L + L LA Y+IA+ NQV A
Sbjct: 715 SDRPVKLLVVDSLMAHFRAEYVGRGTLAERQQKLAKHLADLHRLADLYDIAVFVTNQVQA 774
>UniRef50_A2XZT8 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 353
Score = 45.2 bits (102), Expect = 0.002
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 18/203 (8%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS-IHNLPKC-------SVYI 558
+++T +D+ L GG G + E+ G SG GKTQ L + + LP+C +YI
Sbjct: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
Query: 557 CTEDLFPAKR--------FNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLL 402
TE F ++R F QI + Q + V + + + LL
Sbjct: 141 DTESKFSSRRMIEIGEKSFPQIFRQ-EGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLL 199
Query: 401 QQNIVSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFA 222
Q + V L+V+DS+AA ++ Q + + + Y + + ++ A
Sbjct: 200 QHD-VKLLVVDSMAALMSSSIAEFSQIPVVVTN-QVRSQSNDDGYRYSFEVEKKYDSNNA 257
Query: 221 DSDSIH--PALGLAWSNMVSTRL 159
+ H ALG+ W++ V+ RL
Sbjct: 258 EGFESHLVAALGIQWAHAVTIRL 280
>UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 226
Score = 45.2 bits (102), Expect = 0.002
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL---VLYTSIHNLPKCSVYICTEDLF 540
+ TG +D ILGGG G I + G+ G+GKT L +Y + N C + ED
Sbjct: 2 LKTGIEGLDAILGGGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDED-- 59
Query: 539 PAKRFNQIMNSIKSRDQD---YGKNVFVEHI--SEAKDLQFCIRMQLPKLLQQNIVSLIV 375
I+ KS D +G V + + SE K + LP++++ VS ++
Sbjct: 60 ----EESIIGDAKSVGMDLTAFGDKVHIVRLEASEVKKSLEKLESDLPEIVRSLGVSRML 115
Query: 374 IDSIA 360
+DSI+
Sbjct: 116 VDSIS 120
>UniRef50_O58001 Cluster: DNA repair and recombination protein radA
[Contains: Pho radA intein]; n=3; Pyrococcus|Rep: DNA
repair and recombination protein radA [Contains: Pho
radA intein] - Pyrococcus horikoshii
Length = 529
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGK 615
+ISTG +D +LGGG T I E+FGE GSGK
Sbjct: 120 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 152
>UniRef50_Q3SA55 Cluster: ATPase RecA-superfamily; n=1; uncultured
euryarchaeote Alv-FOS4|Rep: ATPase RecA-superfamily -
uncultured euryarchaeote Alv-FOS4
Length = 293
Score = 44.8 bits (101), Expect = 0.002
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLF 540
+ S+G +D ++ GGFR T N I G SG+GKT + +H + + +YI E+
Sbjct: 4 RFSSGIFGLDRLIEGGFRDKTANVIVGSSGTGKTTFAIQFIMHGIENGEQGLYISLEEK- 62
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
P + + ++ Y + +F H+ + ++ + I QLP L++ LI ++
Sbjct: 63 PKQIMEEAALMGFDMEKYYEEKLFFIHL-KGENFKKMIEEQLPALVKARNDYLIKTRTVV 121
Query: 359 AP 354
P
Sbjct: 122 DP 123
>UniRef50_Q8DVY2 Cluster: DNA repair protein radA; n=46;
Bacteria|Rep: DNA repair protein radA - Streptococcus
mutans
Length = 466
Score = 44.4 bits (100), Expect = 0.003
Identities = 40/160 (25%), Positives = 71/160 (44%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
++ T + + +LGGG G++ I G+ G GK+ L+L S K +V+ + +
Sbjct: 82 RVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGE---- 137
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
+ IK R + G ++ E A+ IR ++ K+ ++IDSI
Sbjct: 138 ----ESAEQIKLRSERLG-DIDNEFYLYAETNMQSIRAEIEKIQP----DFLIIDSIQTV 188
Query: 353 FRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
E + ++RE+ L+ LA+ NIA + VT
Sbjct: 189 MSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVT 228
>UniRef50_Q384W8 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 423
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
ISTG +DD+L GG + G + EI G SG+GKT L L
Sbjct: 133 ISTGHKCLDDVLAGGVKCGLVTEITGASGTGKTALAL 169
>UniRef50_Q7MXG3 Cluster: DNA repair protein RadA; n=33;
Bacteria|Rep: DNA repair protein RadA - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 461
Score = 44.0 bits (99), Expect = 0.004
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 6/166 (3%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKC-SVYICTED--- 546
+I G + D +LGGG G + GE G GK+ L+L T + LP+ ++Y+ E+
Sbjct: 73 RIRLGDEEFDRVLGGGIVKGAFVLLGGEPGIGKSTLILQT-VLRLPQLRTLYVSGEESAR 131
Query: 545 --LFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVI 372
A+R Q MN Y + +S A++L P LL VI
Sbjct: 132 QLKMRAERLGQAMNGC----YVYCETNIERILSRAEEL-------TPDLL--------VI 172
Query: 371 DSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
DSI + E G++RE A +L+ + I ++ I +T
Sbjct: 173 DSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHIT 218
>UniRef50_Q5K9D6 Cluster: RAD57 protein, putative; n=2;
Filobasidiella neoformans|Rep: RAD57 protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 598
Score = 44.0 bits (99), Expect = 0.004
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 55/217 (25%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL-------YTSIHNLPKCSVYICT 552
ISTG +D+ LGGG R G + EI GES +GK+ L +S+ + P S+ + +
Sbjct: 98 ISTGDEGLDECLGGGLRRGCLYEIAGESAAGKSHFALTLALCCQLSSLTSSPGGSLILTS 157
Query: 551 EDLFPAKRFNQI------MNSIKSRDQDYGK----------NVFVEHISEAKDLQFCIRM 420
E R Q+ ++ ++ ++ G+ N+ +S+ L+ +
Sbjct: 158 ERELSTDRLIQLGEPLLAVHEPRAEERPEGEIDPRVKGLLDNILSNRVSDIDALEHALSY 217
Query: 419 QLPKLLQQNI-------------------VSLIVIDSIAA-------------PFRVEST 336
+P LL+ + + LI++DS+ A P S+
Sbjct: 218 VIPALLESRLKTSSSSSSQPFPSRSHLKPIRLIILDSLTALLRGGSASSPSTRPAATSSS 277
Query: 335 DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASF 225
+R+ L +A +L LA +Y++A+V INQV+ F
Sbjct: 278 SLTERSKHLCVVADLLKALAARYDLAVVVINQVSDVF 314
>UniRef50_Q12UA7 Cluster: KaiC; n=1; Methanococcoides burtonii DSM
6242|Rep: KaiC - Methanococcoides burtonii (strain DSM
6242)
Length = 243
Score = 44.0 bits (99), Expect = 0.004
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
++STG +D++L GGF GT N + G+SG+GKT + + K +C +
Sbjct: 9 RVSTGIRGLDEMLKGGFFKGTANVVSGKSGTGKTIFGTQFLMEGVNKGETVMCIITSEES 68
Query: 533 KRFNQIMNSIKSRDQD----YGKNVFVEHISEAKDLQFCIR---MQLPKLLQQNIVS--- 384
K + M S D D GK VFV+ + LQ + M+L K ++ I S
Sbjct: 69 KSLVREMQSSFGWDLDGLVKDGKLVFVDITDPSLRLQKSVEIAPMELIKSFKKLIESKLE 128
Query: 383 -----LIVIDSIAAPFRVESTDYVQR 321
+ IDS+ A F ++Y R
Sbjct: 129 ETKPDRVFIDSVEAIFLAIESNYKLR 154
>UniRef50_Q9PR61 Cluster: Protein recA; n=1; Ureaplasma parvum|Rep:
Protein recA - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 334
Score = 43.6 bits (98), Expect = 0.005
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Frame = -2
Query: 710 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
ISTG ID I G G G I EI+G SGKT + L T I K + DL
Sbjct: 39 ISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQT-IAECQKTGGTVVLLDL--E 95
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
F+ +N KS D K + + + + F + + L++ N + LIVIDS+AA
Sbjct: 96 GSFD--INYAKSLKVDLTKLIITQ--PQTGEQAFDM---IETLIKTNSIDLIVIDSVAA 147
>UniRef50_UPI00005020FA Cluster: similar to RAD51 homolog protein
isoform 1 (LOC364752), mRNA; n=2; Mammalia|Rep: similar
to RAD51 homolog protein isoform 1 (LOC364752), mRNA -
Rattus norvegicus
Length = 313
Score = 43.2 bits (97), Expect = 0.007
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 2/161 (1%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKR 528
+TG ++D +L G TG+ EIFG + KTQ+ H L Y TE F +
Sbjct: 98 TTGTEELDKLLQGRMETGSTIEIFGAFQTRKTQI-----CHTLAVTWQYNDTESTFRLEL 152
Query: 527 FNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFR 348
+ +S ++ Y + Q + Q ++ + + +++DS A +R
Sbjct: 153 LLAVADSDVLDNEAYAQGFNTNQ-------QIQLLYQASAMMVEPRYAFLIVDSATALYR 205
Query: 347 VESTDYVQRAGELRELAI--MLITLAQQYNIAIVCINQVTA 231
E + + + + ML+ LA ++ + ++ NQV A
Sbjct: 206 TEYSCHGELSARQMHARFLRMLLQLAHEFGVIVITTNQVVA 246
>UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep:
RAD51 homolog - Mus musculus (Mouse)
Length = 178
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ 609
+I+TG ++D +L GG TG+I E+FGE +GKTQ
Sbjct: 144 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQ 178
>UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter
dehalogenans 2CP-C|Rep: Protein recA - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 494
Score = 43.2 bits (97), Expect = 0.007
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--NLPKCSVYICT 552
++STG +D +LGGG +I + GE GSGKT L L H K S+Y T
Sbjct: 12 RVSTGVEGLDQVLGGGIPAKSITVVSGEPGSGKTVLALQMLFHAARQGKRSLYFTT 67
>UniRef50_Q8F261 Cluster: DNA repair protein radA-like protein; n=4;
Leptospira|Rep: DNA repair protein radA-like protein -
Leptospira interrogans
Length = 459
Score = 42.7 bits (96), Expect = 0.009
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--IHNLPKCSVYICTEDLF 540
++ TG ++D +LGGG G++ I GE G GK+ L+L S + K +YI E+
Sbjct: 72 RMGTGLKELDLVLGGGLVPGSLTLIGGEPGVGKSTLILEVSRYLTQANKNVLYISGEESP 131
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
R +++ N+FV + A+++ I + P +++ +DSI
Sbjct: 132 SQIRMRAERMGLRA------SNLFVTSETIAENISSMIEGENP--------AVVFVDSIQ 177
Query: 359 APFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
R + +LRE +L+ A++ I I+ +T
Sbjct: 178 TIAREALPNQAGTVTQLRECTQVLLETAKRSGIPILMTGHIT 219
>UniRef50_P24517 Cluster: DNA repair protein radA; n=195;
Bacteria|Rep: DNA repair protein radA - Salmonella
typhimurium
Length = 460
Score = 42.7 bits (96), Expect = 0.009
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
+ STG + D +LGGG G+ I G G+GK+ L+L T C + + L+
Sbjct: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT------LCKLAEQMKTLYVT 129
Query: 533 KRFNQIMNSIKSRDQDYG-KNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
+ + + R G + +SE Q C+ + ++ L+VIDSI
Sbjct: 130 G--EESLQQVAMRAHRLGLPTANLNMLSETSIEQICL------IAEEEQPKLMVIDSIQV 181
Query: 356 PFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ ++RE A L A+ +AIV + VT
Sbjct: 182 MHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVT 222
>UniRef50_P37572 Cluster: DNA repair protein radA homolog; n=50;
Bacteria|Rep: DNA repair protein radA homolog - Bacillus
subtilis
Length = 458
Score = 42.7 bits (96), Expect = 0.009
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--IHNLPKCSVYICTEDLF 540
++ T + + +LGGG G++ I G+ G GK+ L+L S + +YI E
Sbjct: 72 RVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGE--- 128
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
+ + K R G N H+ D+++ + +Q+ S +V+DSI
Sbjct: 129 ------ESVKQTKLRADRLGINNPSLHVLSETDMEY-----ISSAIQEMNPSFVVVDSIQ 177
Query: 359 APFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
++ + T ++RE L+ +A+ I I + VT
Sbjct: 178 TVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVT 219
>UniRef50_A3KGH9 Cluster: RAD51 homolog; n=13; Eukaryota|Rep: RAD51
homolog - Mus musculus (Mouse)
Length = 236
Score = 42.3 bits (95), Expect = 0.012
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Frame = -2
Query: 650 INEIFGESGSGKTQLVLYTSIH-NLP-------KCSVYICTEDLFPAKRFNQIMNSIKSR 495
I E+FGE +GKTQ+ ++ LP ++YI TE F +R +
Sbjct: 1 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS 60
Query: 494 DQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRVESTDYVQRAG 315
D NV D Q + Q ++ ++ +L+++DS A +R TDY R G
Sbjct: 61 GSDVLDNVAYAR-GFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR---TDYSGR-G 115
Query: 314 EL--RELAI-----MLITLAQQYNIAIVCINQVTA 231
EL R++ + ML+ LA ++ +A+V NQV A
Sbjct: 116 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 150
>UniRef50_Q05FN0 Cluster: Protein recA; n=1; Candidatus Carsonella
ruddii PV|Rep: Protein recA - Carsonella ruddii (strain
PV)
Length = 296
Score = 42.3 bits (95), Expect = 0.012
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 7/170 (4%)
Frame = -2
Query: 725 VKNCK-ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICT 552
+KN + ISTG +D ILG GG G I EI+G+ SGKT ++ I K
Sbjct: 7 LKNVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKTTFA-FSIIKEAQKVGDICAY 65
Query: 551 EDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVI 372
D+ N I N G N+ I + ++ + + KL+ V LI+I
Sbjct: 66 IDVEHCIDVNYIEN--------LGINLKTLLIFQPENGEKVFEIS-QKLINSTYVKLIII 116
Query: 371 DSIAAPF-RVESTDYVQRAGE----LRELAIMLITLAQQYNIAIVCINQV 237
DSIAA +E + G L + +I L ++ N+ ++ INQV
Sbjct: 117 DSIAAIIPELEIYNNDNNIGSHSRFLSKNLKKIIPLLRKNNVLLILINQV 166
>UniRef50_O29797 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 443
Score = 42.3 bits (95), Expect = 0.012
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = -2
Query: 719 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
N KI+TG D++LGGG GT G SG GKT L+L
Sbjct: 237 NNKIATGIDGFDELLGGGIIRGTATAFVGPSGGGKTVLML 276
Score = 36.7 bits (81), Expect = 0.61
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL---VLYTSIHNLPKCSVYICTEDLF 540
+ TG DDI GG +R G I I G GSGKT LY + +YI +
Sbjct: 4 VKTGIEGFDDIFGGFYR-GQIILIAGNPGSGKTTFCAKFLYEGARRFGENGLYISIGE-- 60
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL----IVI 372
+ F + M + + K +++ MQL + L +N + L IVI
Sbjct: 61 SKEEFYEYMKKLGMDFEKLEKTGSFKYVEMLAPTSEDALMQLSRELTKNALELKATRIVI 120
Query: 371 DSIA 360
DSI+
Sbjct: 121 DSIS 124
>UniRef50_UPI0000E46317 Cluster: PREDICTED: similar to Trad; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Trad - Strongylocentrotus purpuratus
Length = 208
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+STGC ID +L GG T + EI G++ GKTQ L
Sbjct: 45 LSTGCDSIDKLLDGGVYTSELTEIVGQAAVGKTQFCL 81
>UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF14738, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 353
Score = 41.9 bits (94), Expect = 0.016
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = -2
Query: 566 VYICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQN-I 390
++I TE+ F R I + + NV ++ + K ++ +
Sbjct: 170 IFIDTENTFRPDRLRDIADRFNVDQEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGV 229
Query: 389 VSLIVIDSIAAPFRVESTDYVQRAGELRELAIMLITL---AQQYNIAIVCINQVTA 231
L+V+DSI A FRV+ + + A ++LA ML L +++YN+A+ NQ+TA
Sbjct: 230 FKLLVVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFITNQMTA 285
Score = 40.3 bits (90), Expect = 0.050
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
I+TG + D +LGGG + I E FGE +GKTQL
Sbjct: 84 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQL 118
>UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9;
Clostridiaceae|Rep: DNA repair protein radA -
Clostridium tetani
Length = 465
Score = 41.9 bits (94), Expect = 0.016
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLF 540
+ISTG ++++ +LGGG G++ I G+ G GK+ L+L + + K +YI E+
Sbjct: 79 RISTGINELNRVLGGGIVRGSLTLISGDPGIGKSTLLLQAANNIAEKYGKILYISGEESQ 138
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
R R Q K+V++ ++E D+ I + K+ + I++DSI
Sbjct: 139 EQIRLR------GERLQALCKDVYI--LAET-DINI-ILANIDKIKP----TFIILDSIQ 184
Query: 359 APFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ E + ++RE + +++ LA+ NI + VT
Sbjct: 185 TLYNPEISSAPGSVSQVRECSNIIMRLAKTNNIPFFIVAHVT 226
>UniRef50_Q7UMQ5 Cluster: Putative uncharacterized protein; n=3;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 295
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 585
++ TG + +D++LGGG GT+ + G +G GKTQL + + H
Sbjct: 4 RLQTGITTLDEMLGGGLLPGTMTVVLGATGIGKTQLGIQFAKH 46
>UniRef50_A3FQA6 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 304
Score = 41.9 bits (94), Expect = 0.016
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = -2
Query: 743 TCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ--LVLYTSI 588
T ++L+ + ++STG + +D GG + EI GE+G+GKTQ L L TS+
Sbjct: 27 TSEQMLMDDTRLSTGSNVVDKAFNGGIPKRILFEITGEAGTGKTQWCLTLITSV 80
Score = 34.3 bits (75), Expect = 3.3
Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Frame = -2
Query: 524 NQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFR- 348
+ ++N + ++ +Y K V I+ +DL ++ +P + + + I IDSI +R
Sbjct: 142 DDLLNILHNKLMNYVK---VYKINTLEDLNIFLQRVIPGICLNHKIDAIFIDSITNLYRS 198
Query: 347 -VESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFAD---------SDSIHPA 198
V ++ + L + + + ++ + ++ NQ T + + P+
Sbjct: 199 KVSFSENSSASTSLIQFSNVFKRISVDQDSWLIVTNQTTTELNEFHIPGSNIFGNKQKPS 258
Query: 197 LGLAWSNMVSTRLRISKT 144
LGL WSN ++ R+ +SK+
Sbjct: 259 LGLIWSNSINWRIFLSKS 276
>UniRef50_Q0W7M6 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 289
Score = 41.9 bits (94), Expect = 0.016
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLF 540
K+ TG +D +L GGF + + G +G+GKT + L L S +YI E+
Sbjct: 3 KLKTGILGLDSLLDGGFNEHSATILVGSAGTGKTTMALQFLRKGLENGSDAIYITLEE-- 60
Query: 539 PAKRFNQIMNSIKSRD-QDY---GKNVFVEHISEAKDLQFCIRMQLPKLLQ--QNIVSLI 378
P + + ++ D + Y G VF+E + KDL I+ +LP+ + + + I
Sbjct: 61 PRSQIIEEARNMGWEDIEQYVEKGSLVFLE--AAGKDLADFIKEELPRFVSEWEGSQARI 118
Query: 377 VIDSIAAPFRVESTDYVQR 321
V+D + Y QR
Sbjct: 119 VVDPLTPVIWANENKYDQR 137
>UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo
sapiens|Rep: Isoform 4 of O75771 - Homo sapiens (Human)
Length = 283
Score = 41.5 bits (93), Expect = 0.022
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -2
Query: 389 VSLIVIDSIAAPFRVESTDYVQRAGE--LRELAIMLITLAQQYNIAIVCINQVTASFADS 216
V ++V+DS+ A QR G + +LA L TLA+ +A+V N +T DS
Sbjct: 155 VKVVVVDSVTAVVS-PLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRD-RDS 212
Query: 215 DSIHPALGLAWSNMVSTRL 159
+ PALG +WS + STR+
Sbjct: 213 GRLKPALGRSWSFVPSTRI 231
Score = 40.7 bits (91), Expect = 0.038
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -2
Query: 734 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ 609
EL +STG +D +L G TG + EI G GSGKTQ
Sbjct: 74 ELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQ 115
>UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein
kinase; n=6; Proteobacteria|Rep: Non-specific
serine/threonine protein kinase - Pseudomonas putida F1
Length = 481
Score = 41.5 bits (93), Expect = 0.022
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+IS+G D++LGGG TG+++ + G SG GKT L L
Sbjct: 242 RISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGL 279
>UniRef50_Q4CYK4 Cluster: DNA repair protein, putative; n=2;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 400
Score = 41.5 bits (93), Expect = 0.022
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--NLPK------CSVYIC 555
ISTG +D L GG G I EI G +G+GKT L ++ + PK C+++I
Sbjct: 118 ISTGQECLDGALRGGLGCGLITEITGATGAGKTAFALNLAMRAASYPKKDDRKSCTLWIT 177
Query: 554 TE-DLFPA-------KRFNQIMNSIKSRD----QDYGKNVFVEHISEAKDLQFCIRMQLP 411
T+ FPA KR + + D +D +NV V L+ +
Sbjct: 178 TDVSAFPATVAAAVLKRHFEARSCSDQEDGEDLEDVLRNVAVTVHPTLAQLRQYFPVLRS 237
Query: 410 KLLQQNIVSLIVIDS----IAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCIN 243
L + V +V+D+ + F + +R + E +L ++AQ++ +AIV I
Sbjct: 238 HLANRTDVRFVVVDNFSVLVRRSFPGVDEELTERHEAVAEFMSILKSIAQEFCVAIV-IT 296
Query: 242 QVTASFADSDSIHPALGLAWSNMVSTRLRISK 147
V+ LG ++ + V+TRLR+++
Sbjct: 297 TVSGE---------ELGHSFLHAVNTRLRLTQ 319
>UniRef50_Q5JDP8 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 448
Score = 41.5 bits (93), Expect = 0.022
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--LYTSIHNLPKCSVYICTEDLF 540
++ TG +D++LGGG G+I I G +GSGKT L L +++ K +YI E+
Sbjct: 237 RLKTGILGLDELLGGGLYEGSITLIAGPTGSGKTILALNLASNLSKSGKKVLYIAYEESL 296
Query: 539 PAKR 528
A R
Sbjct: 297 AALR 300
Score = 37.5 bits (83), Expect = 0.35
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL 579
I TG +D L GGF G+ + G GSGKT L ++ +N+
Sbjct: 4 IPTGIPSLDKALNGGFSRGSTILLAGNPGSGKTHLAIHVLYNNM 47
>UniRef50_Q4Q3T8 Cluster: Recombinase Rad51, putative; n=3;
Leishmania|Rep: Recombinase Rad51, putative - Leishmania
major
Length = 687
Score = 41.1 bits (92), Expect = 0.029
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = -2
Query: 746 FTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH------ 585
F R+ + ++T ++D +LGGG G + EI G G GKTQL++ ++
Sbjct: 210 FQARQAQGFSTHVTTFSGELDGVLGGGVPVGGVTEISGPPGVGKTQLLMQLAVSCAMPVE 269
Query: 584 --NLPKCSVYICTEDLFPAKRFNQIMNSIKS 498
+ +++ TE F A+R Q+ + S
Sbjct: 270 FGGMGGACLFVDTEGSFVAERLEQMATAAVS 300
>UniRef50_A0B9F0 Cluster: Putative circadian clock protein, KaiC;
n=1; Methanosaeta thermophila PT|Rep: Putative circadian
clock protein, KaiC - Methanosaeta thermophila (strain
DSM 6194 / PT) (Methanothrixthermophila (strain DSM 6194
/ PT))
Length = 248
Score = 41.1 bits (92), Expect = 0.029
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 612
K K+ +G D+++ GGF GT+N + G SG+GKT
Sbjct: 13 KYTKVGSGIPGFDELVNGGFNKGTVNTVTGGSGTGKT 49
>UniRef50_Q7U4K5 Cluster: Protein recA; n=10; cellular
organisms|Rep: Protein recA - Synechococcus sp. (strain
WH8102)
Length = 375
Score = 41.1 bits (92), Expect = 0.029
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 597
ISTG +D LGGG+ G + EI+G SGKT L L+
Sbjct: 54 ISTGALTLDLALGGGYPKGRVVEIYGPESSGKTTLTLH 91
>UniRef50_UPI0000D56C94 Cluster: PREDICTED: similar to RAD51 homolog
C isoform 1; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RAD51 homolog C isoform 1 - Tribolium
castaneum
Length = 221
Score = 40.7 bits (91), Expect = 0.038
Identities = 33/150 (22%), Positives = 69/150 (46%)
Frame = -2
Query: 692 KIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKRFNQIM 513
++D +L +G + E+ G G+G+TQ+ L+ ++ + +V+I T + +R +I
Sbjct: 73 QLDCLLSKEIASGVVTELCGLPGTGRTQICLHLAV-GVAGETVFIHTNNNLSVERLKEIA 131
Query: 512 NSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRVESTD 333
+ + + +L+ ++ L L N + L+++DSIA P + +
Sbjct: 132 EKFVPDVGALMQKLLCIEATNFTELRATVQF-LKTWLSNNQIRLLIVDSIAWPLKQQ--P 188
Query: 332 YVQRAGELRELAIMLITLAQQYNIAIVCIN 243
++R + L L LA +N A+ N
Sbjct: 189 LMERPHLIYRLFQELRILANLHNFAVKISN 218
>UniRef50_Q1ZXF0 Cluster: Putative DNA repair protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative DNA repair
protein - Dictyostelium discoideum AX4
Length = 354
Score = 40.7 bits (91), Expect = 0.038
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = -2
Query: 707 STGCSKIDDILGG-GFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS---VYICTEDLF 540
S+G +D +LGG GF +G I E+ G + GKTQ+ + S++ + + +YI + + F
Sbjct: 90 SSGIKLLDQLLGGNGFTSGEIYELVGNTSCGKTQISMCCSLNLSQQYNSNIIYIDSSNSF 149
Query: 539 PAKRFNQIMNS---IKSRDQDYGKNVFVEH 459
R +I S IK R + K +H
Sbjct: 150 SPPRLIEIFKSNYLIKQRQKQQQKQQQKQH 179
>UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomyces
capsulatus NAm1|Rep: DNA repair protein RAD51 -
Ajellomyces capsulatus NAm1
Length = 297
Score = 40.7 bits (91), Expect = 0.038
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
++ G ++D +L GG TG+I EIFGE +GK+Q+
Sbjct: 76 LAEGSKQLDTLLAGGIETGSITEIFGEFRTGKSQI 110
>UniRef50_Q5XDZ7 Cluster: DNA repair protein radA homolog; n=54;
Bacteria|Rep: DNA repair protein radA homolog -
Streptococcus pyogenes serotype M6
Length = 453
Score = 40.7 bits (91), Expect = 0.038
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSV-YICTEDLFP 537
+ T S+ + +LGGG G++ I G+ G GK+ L+L S K +V Y+ E
Sbjct: 69 RTQTDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGE---- 124
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
+ IK R + G ++ E A+ IR ++ + ++IDSI
Sbjct: 125 -----ESAEQIKLRSERLG-DIDNEFYLYAETNMQAIRTEIENIKP----DFLIIDSIQT 174
Query: 356 PFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ T ++RE+ L+ LA+ NIA + VT
Sbjct: 175 IMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVT 215
>UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence; n=32;
Eukaryota|Rep: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence - Mus
musculus (Mouse)
Length = 285
Score = 40.3 bits (90), Expect = 0.050
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
I+TG + D +LGGG + I E FGE +GKTQL
Sbjct: 101 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQL 135
Score = 39.9 bits (89), Expect = 0.066
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Frame = -2
Query: 401 QQNIVSLIVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVTA 231
+ I L++IDSI A FRV+ + + +R +L ++ L ++++YN+A+ NQ+TA
Sbjct: 158 EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 217
>UniRef50_Q8G3Y2 Cluster: DNA repair protein radA; n=4;
Bifidobacterium|Rep: DNA repair protein radA -
Bifidobacterium longum
Length = 512
Score = 40.3 bits (90), Expect = 0.050
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS 591
++ TG S+ D +LGGG G++ I GE G GK+ L+L T+
Sbjct: 82 RLGTGFSEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQTA 122
>UniRef50_Q89T73 Cluster: Protein recA; n=9; Bacteria|Rep: Protein
recA - Bradyrhizobium japonicum
Length = 506
Score = 40.3 bits (90), Expect = 0.050
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+ISTG +DDILGGGF ++ G+ GSGKT L L
Sbjct: 15 RISTGNFGLDDILGGGFDPERMHLFEGQPGSGKTTLAL 52
>UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7;
Proteobacteria|Rep: DNA repair protein radA -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 459
Score = 40.3 bits (90), Expect = 0.050
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 5/207 (2%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT-SIHNLPKCSVYICTEDLFP 537
+ S+G + D +LGGG G++ + G+ G+GK+ L+L + K ++Y+ E+
Sbjct: 74 RFSSGIGEFDRVLGGGIVPGSVLLLCGDPGAGKSTLLLQSIGAVAAIKSALYVSGEE--S 131
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
+ +Q +K+++ D NV E E Q+ L+ Q ++IDSI
Sbjct: 132 IHQISQRAERLKTQNID-KINVVAETSVE----------QVLHLVTQLKAEFVIIDSIQT 180
Query: 356 PFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTAS---FADSDSIHPALGL- 189
+ +++E A L A+ + + I + IH GL
Sbjct: 181 MTVAHNDSAAGSPSQVKESAAALTRFAKTEGVTFLMIGHINKDSNVAGPMQLIHIVDGLF 240
Query: 188 AWSNMVSTRLRISKTTQSVIIDDSGVC 108
A S+ + R+ +T+++ DS C
Sbjct: 241 ALSSTSDEKFRVLRTSKNRFGADSESC 267
>UniRef50_A3EUB1 Cluster: DNA repair protein radA; n=1;
Leptospirillum sp. Group II UBA|Rep: DNA repair protein
radA - Leptospirillum sp. Group II UBA
Length = 461
Score = 40.3 bits (90), Expect = 0.050
Identities = 39/160 (24%), Positives = 68/160 (42%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
+ S+G + D +LGGGF G+ + G+ G GK+ L L H V + P
Sbjct: 72 RTSSGFREFDRVLGGGFVRGSFILLGGDPGVGKSTLALQAVAHMANGHKVLYAAGEESP- 130
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
++ R G+ I DL+ +R ++ +L + +V+DSI
Sbjct: 131 -------EQVRMRYDRLGRKGGDLFILPETDLEAIVR-EVKRLSPE----FLVVDSIQTV 178
Query: 353 FRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
G LRE A +L+ LA++ ++ ++ + VT
Sbjct: 179 TMGADGPSSGSVGLLRESASVLLELAKRASVTVLIVGHVT 218
>UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA repair protein RadA - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 451
Score = 39.9 bits (89), Expect = 0.066
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 2/162 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--IHNLPKCSVYICTEDLF 540
+ S+G S+ D +LGGG G++ + G+ G GK+ L+L + I K +Y+ E
Sbjct: 65 RFSSGLSEFDRVLGGGIVPGSLILLGGDPGIGKSTLLLQVAGLIAAAGKRILYLSGE--- 121
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
+ + I+ R G N + +D+ L + + LI+IDSI
Sbjct: 122 ------ESLQQIRLRASRLGINNDTIFLLNEQDIDL-----LHEYINDLDPDLIIIDSIQ 170
Query: 359 APFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ + + +LRE ++ +A++ + A+ + VT
Sbjct: 171 TVYSSKLSSIPGSVSQLRESTAAVMQIAKKMDKAVFLVGHVT 212
>UniRef50_Q08YR0 Cluster: Putative uncharacterized protein; n=1;
Stigmatella aurantiaca DW4/3-1|Rep: Putative
uncharacterized protein - Stigmatella aurantiaca DW4/3-1
Length = 429
Score = 39.9 bits (89), Expect = 0.066
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Frame = -2
Query: 725 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYI-C 555
V++ +++TG +D +L GG G+ I G +GSGKT L L + L + +Y+
Sbjct: 209 VRDARLATGVKGLDTMLQGGVWAGSSTLIEGRTGSGKTTLALQFILEGLKRGEPGLYVNF 268
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQF-CIRMQLPKLLQQNIVSLI 378
E+ R Q + + Q G ++ +LQ I ++L +++++ + +
Sbjct: 269 QENPTQLARIIQSLGWDVAEAQRMGLHLLYH---SPVELQIDSILVKLFRIIEEKHIKRV 325
Query: 377 VIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNI 261
+D++ D + A +L+ L L LAQ +++
Sbjct: 326 AVDAVG--------DLISAASDLQRLFGYLYALAQHFSV 356
>UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 238
Score = 39.9 bits (89), Expect = 0.066
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = -2
Query: 389 VSLIVIDSIAAPFRVE-----STDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASF 225
V LIV+DS+A+ R E S + +R L + A +L +A+ +NI +V NQ+T+ F
Sbjct: 85 VKLIVLDSVASLIRKEFDSQSSRNIKERTNLLSKEAAILKYIAETFNIPVVVTNQITSRF 144
Query: 224 ADSDSIHPA 198
A S + A
Sbjct: 145 APSKHVTEA 153
>UniRef50_Q18BZ3 Cluster: ABC transporter, ATP-binding/permease
protein precursor; n=2; Clostridium difficile|Rep: ABC
transporter, ATP-binding/permease protein precursor -
Clostridium difficile (strain 630)
Length = 607
Score = 39.5 bits (88), Expect = 0.087
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -2
Query: 692 KIDDILGGGFRTGTINEIFGESGSGKTQLV-LYTSIHNLPKCSVYICTEDLFPAKR 528
KI D + + GT N I GE+GSGKT ++ L T+ +++ + S+++ +D++ R
Sbjct: 383 KILDNINLKIKAGTSNAIIGETGSGKTTIINLITNFYHIDEGSIFLDGKDIYSINR 438
>UniRef50_Q02AB2 Cluster: RecA domain protein; n=1; Solibacter
usitatus Ellin6076|Rep: RecA domain protein - Solibacter
usitatus (strain Ellin6076)
Length = 248
Score = 39.5 bits (88), Expect = 0.087
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 585
S+G +D+ LGGG G + E +G SG GKT L + + H
Sbjct: 29 SSGFQALDEALGGGLPRGQMVEFYGPSGCGKTTLAIQIAAH 69
>UniRef50_Q30L73 Cluster: Gp72; n=1; Listeria phage P100|Rep: Gp72 -
Listeria phage P100
Length = 414
Score = 39.5 bits (88), Expect = 0.087
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY-TSIHNLPKCSV-YICTEDLF 540
K+ T ++D ILGGG G + EI G++ SGK+ L ++ T + C V +I TE
Sbjct: 37 KLPTFIPQLDYILGGGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDCKVIWIDTEGTA 96
Query: 539 PAKRFNQI 516
R +Q+
Sbjct: 97 DPSRLSQL 104
>UniRef50_P38953 Cluster: DNA repair protein RAD55; n=2;
Saccharomyces cerevisiae|Rep: DNA repair protein RAD55 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 406
Score = 39.5 bits (88), Expect = 0.087
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Frame = -2
Query: 734 ELLVKNCK-ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYI 558
+L+V++ K +S+G + +D+IL GF+ +I EIFG G GKT + ++L
Sbjct: 9 QLIVESPKPLSSGITGLDEILNLGFQARSIYEIFGPPGIGKTNFGIQLVCNSLEGIQQSE 68
Query: 557 CTED-LFPAKRFNQI-MNSIKSRDQDY---GKNVFVEHISEAKDLQFCIRMQLPKLLQQN 393
+D + + F ++ +N ++ R Q + +NV I++ L + + L KL Q
Sbjct: 69 INDDKILWIETFQEMPINILRERFQKFKIVEENVKRVRITKFGQLLYFFQ-NLFKLSQSV 127
Query: 392 IVSLIVIDSIA 360
L++ID +
Sbjct: 128 RYKLVIIDGFS 138
>UniRef50_A5KL93 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 635
Score = 39.1 bits (87), Expect = 0.12
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Frame = -2
Query: 656 GTINEIFGESGSGKTQLVLYTSIH-----NLPKCSVYICTEDLFPAKRFNQIMNSIKSRD 492
G + I G G GKT L + + + LP L+ + I ++IK R
Sbjct: 339 GKVTLIQGNPGKGKTWLAMAIAAYCTNGKELPNALPIEPFNVLYQTAE-DGIADTIKPRL 397
Query: 491 QDYGKNVF-VEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRVESTDYVQRAG 315
G ++ V I+E + ++ K ++QN V L+++D I A + + D + RA
Sbjct: 398 AKCGADMTRVRFINEEEKQLSMTDDRIEKAIRQNNVRLMIMDPIQA-YLGSNVD-MNRAN 455
Query: 314 ELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIHPALG 192
E+R L L T+A++ AIV I + S + S S + +LG
Sbjct: 456 EIRPLFRHLSTIAERTGCAIVLIGHLNKS-SGSQSDYRSLG 495
>UniRef50_A0MN30 Cluster: RecA/RadA recombinase; n=1; Thermus phage
phiYS40|Rep: RecA/RadA recombinase - Thermus phage
phiYS40
Length = 339
Score = 39.1 bits (87), Expect = 0.12
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Frame = -2
Query: 710 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
+STG +D LG GG G I E++G+ SGKT L T I + K + IC +
Sbjct: 36 VSTGILTVDLALGIGGIPMGKIIEVYGQESSGKTTFSLIT-ISQMQKAN-KICA-FIDAE 92
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
F+ I + G N+ + EA L+ + +L L+ Q V +V DSI AP
Sbjct: 93 NSFDPIW------AETLGVNLDELLLIEANSLEESLE-KLEFLINQG-VKYVVYDSIVAP 144
Query: 353 FRV--ESTDYVQ-----RAGELRELAIMLITLAQQYNIAIVCINQV 237
V + DY RA L L+ + +Q I+ INQ+
Sbjct: 145 PTVSQNNADYGDSLVGVRARILSMALSKLMPIIRQNKATIMFINQI 190
>UniRef50_Q580V2 Cluster: DNA repair protein, putative; n=1;
Trypanosoma brucei|Rep: DNA repair protein, putative -
Trypanosoma brucei
Length = 477
Score = 39.1 bits (87), Expect = 0.12
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = -2
Query: 728 LVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
LV T + L GGF G + E+ GE+GSGKTQLVL
Sbjct: 166 LVDRLLAGTPSNATGGALEGGFCAGLLTEVHGEAGSGKTQLVL 208
>UniRef50_Q8ZXQ7 Cluster: Putative uncharacterized protein PAE1156;
n=5; Thermoproteaceae|Rep: Putative uncharacterized
protein PAE1156 - Pyrobaculum aerophilum
Length = 268
Score = 39.1 bits (87), Expect = 0.12
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLF 540
+ISTG +D L GG G+ + GE G GK+ L ++ + L VY+ TE
Sbjct: 3 RISTGVDVLDKALEGGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTTE--- 59
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI-VIDSI 363
+ F +M K D+ + V +I+ K+ + +LP+++ +I L+ V +
Sbjct: 60 --QEFRDVMEQAKQLGMDFSR-FSVYNIAWKKEPE-----ELPEIVVIDIFGLLKVARQL 111
Query: 362 AAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIV 252
+ ES + V+R L + ++ + + Y+I V
Sbjct: 112 TEKSKEESPEKVKRYAAL-SIDTLIEAINEAYHILAV 147
>UniRef50_Q0W872 Cluster: Predicted RecA-family ATPase; n=2;
Euryarchaeota|Rep: Predicted RecA-family ATPase -
Uncultured methanogenic archaeon RC-I
Length = 241
Score = 39.1 bits (87), Expect = 0.12
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVYICTED 546
++STG ++D + GG+ G + G GSGKT + +Y + KC VYI TE+
Sbjct: 3 RVSTGIDELDQFISGGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKC-VYIATEE 60
>UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Methanocorpusculum labreanum Z|Rep: RecA-superfamily
ATPase implicated in signal transduction-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 238
Score = 39.1 bits (87), Expect = 0.12
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL---VLYTSIHNLPKCSVYICTEDLF 540
I +G +DD++GGGF G++ + GE+G+G+T LY + N K +YI +
Sbjct: 11 IPSGIPGLDDMIGGGFIKGSVFVLIGETGTGRTMFSLQYLYQGLLNGEKV-MYISLFNPV 69
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRM--QLPKLLQQNIVSLIVID- 369
N + + RD+ K++++ + L F R+ + ++Q+ VS +V++
Sbjct: 70 EQLTGNFLSMYPEMRDR-INKDIYIVQLPPEIFLTFSSRLGNNVAIMIQELGVSRVVVNP 128
Query: 368 -SIAAPFRVESTDY 330
S+ V ST +
Sbjct: 129 FSVLEETLVTSTGF 142
>UniRef50_A0RYZ3 Cluster: RecA/RadA recombinase related protein;
n=1; Cenarchaeum symbiosum|Rep: RecA/RadA recombinase
related protein - Cenarchaeum symbiosum
Length = 218
Score = 39.1 bits (87), Expect = 0.12
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
I +G ID LGGG R G I +IFG SGK+Q+
Sbjct: 2 IRSGIRGIDGFLGGGLRGGFITDIFGPPASGKSQI 36
>UniRef50_Q9PK96 Cluster: DNA repair protein radA homolog; n=9;
Chlamydiales|Rep: DNA repair protein radA homolog -
Chlamydia muridarum
Length = 455
Score = 39.1 bits (87), Expect = 0.12
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYICTEDLF 540
+IST + +LGGG G++ + GE G GK+ L+L S + +Y+C E+
Sbjct: 69 RISTRSKGWNRLLGGGTVCGSLTLLGGEPGIGKSTLLLQISSQFAEQGYKVLYVCGEE-- 126
Query: 539 PAKRFNQIMNSIKS-RDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSI 363
+ S+++ R Q N+F+ + +D I+ Q+ L +++IDSI
Sbjct: 127 -----SVSQTSLRAQRLQISSSNIFLFPETNLED----IKQQISDLAP----DILIIDSI 173
Query: 362 AAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTAS 228
F + ++RE L+ +A+Q I I VT S
Sbjct: 174 QIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKS 218
>UniRef50_A0L497 Cluster: DNA repair protein RadA; n=6;
Bacteria|Rep: DNA repair protein RadA - Magnetococcus
sp. (strain MC-1)
Length = 452
Score = 38.7 bits (86), Expect = 0.15
Identities = 41/160 (25%), Positives = 70/160 (43%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
+I G S++D +LGGG +G I G+ G GK+ L++ L K S + +
Sbjct: 69 RIQIGISELDRVLGGGLVSGAAILIGGDPGIGKSTLLMGA----LAKLSTSLRVLYVSGE 124
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
+ Q+ + D G N +V + + ++ + Q P +L V+DSI
Sbjct: 125 ESLIQLKLRAERMGVD-GANFWVFMENRLEAVEEAVNKQQPDVL--------VVDSIQTI 175
Query: 353 FRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
E ++RE A +I A++ N+A+ I VT
Sbjct: 176 AGDEIPSAAGTVTQVRECASRMIQWAKRRNMALFLIGHVT 215
>UniRef50_Q948V7 Cluster: Chloroplast DNA recombination protein RECA
precursor; n=2; Chlamydomonas reinhardtii|Rep:
Chloroplast DNA recombination protein RECA precursor -
Chlamydomonas reinhardtii
Length = 414
Score = 38.7 bits (86), Expect = 0.15
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY--TSIHNLPKCSVYICTEDLFPAK 531
+G +D LGGG+ G I E++G SGKT L ++ I L YI E F
Sbjct: 98 SGSLTLDAALGGGYPRGRIIEVYGPEASGKTTLAMHGCGEIQRLGGTVAYIDVEHAFD-- 155
Query: 530 RFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
+ S + + ++ + L+ + +L + N+ L+VIDS+AA
Sbjct: 156 ------RTYASAGHHLNNFWYAQPMTGEEALEV-----MDELCRSNVCDLVVIDSVAA 202
>UniRef50_Q00XV2 Cluster: RAD51-like protein 2; n=2;
Ostreococcus|Rep: RAD51-like protein 2 - Ostreococcus
tauri
Length = 570
Score = 38.7 bits (86), Expect = 0.15
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYICTE 549
T C +DD+L GG +G I E G G GKTQ+ + + P+ +VY+ TE
Sbjct: 103 TCCEALDDVLDGGIGSGEITEFCGCPGVGKTQMCTQVCVSASTPEAFGGTDGEAVYVDTE 162
Query: 548 DLFPAKRFNQIMNSI 504
F A R + +++
Sbjct: 163 GSFMADRAMDVASAL 177
>UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 237
Score = 38.7 bits (86), Expect = 0.15
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -2
Query: 734 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
ELL +I +G +D+++GGGF G + + G GSGKT L
Sbjct: 5 ELLKNLDRIPSGVPGLDELIGGGFLPGRVYVVTGPPGSGKTTL 47
>UniRef50_Q2FNQ2 Cluster: Putative circadian clock protein, KaiC;
n=2; Methanomicrobiales|Rep: Putative circadian clock
protein, KaiC - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 237
Score = 38.7 bits (86), Expect = 0.15
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Frame = -2
Query: 701 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL--PKCSVYICTEDLFPAKR 528
G +D++L GG GT++ I G G+GKT Y L + ++YI E+ R
Sbjct: 14 GIKGLDEMLSGGLIEGTVSSIIGAYGTGKTNFAQYYIWQGLIQGQSALYITLEE-----R 68
Query: 527 FNQIMNSIKSRDQD---YGKNVFVEHISEAKDLQFCI---RMQLPKLLQQNIVSLIVIDS 366
++I+ ++++ D Y + F + D I + +LP L+++ +VID
Sbjct: 69 TSRILGYMENKGWDVSQYLDSTFTIVNLDPSDFNLAINSVKNELPTLIKKTGAHRVVIDP 128
Query: 365 IA 360
++
Sbjct: 129 VS 130
>UniRef50_Q0W7M8 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 231
Score = 38.7 bits (86), Expect = 0.15
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLFP 537
+STG +D++L GGF + + G G+GK+ L L ++ L + SVY+ E+
Sbjct: 4 LSTGVQGLDELLQGGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSVYMSLEE--- 60
Query: 536 AKRFNQIMNSIKSRDQD----YGKNVFVEHISEAKDLQFC---IRMQLPKLLQQNIVSLI 378
R ++I+ S + D N + + D++ I+ ++P+L++ + +
Sbjct: 61 --RESEIVESAEGYGWDLQTYIDNNSLILIRLDPNDIKTTLTRIKNEMPRLIKTFGATRL 118
Query: 377 VIDSIAAPFRVESTDYVQRAGELRELAIML 288
VIDSI F + +D +R L E+ +L
Sbjct: 119 VIDSITL-FEMMFSDEAERRLNLFEIFAIL 147
>UniRef50_O14129 Cluster: DNA repair protein rhp55; n=1;
Schizosaccharomyces pombe|Rep: DNA repair protein rhp55
- Schizosaccharomyces pombe (Fission yeast)
Length = 350
Score = 38.7 bits (86), Expect = 0.15
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Frame = -2
Query: 689 IDDILGG-GFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLFPAKRFNQ 519
+DD GG G + G I+E+ G G GKT L L + + L S +++ T P +R Q
Sbjct: 32 LDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLSGSRVIWVETCQPIPMERLRQ 91
Query: 518 IMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNI--------VSLIVIDSI 363
++++ QD + + + D+ + + +N + L++ID++
Sbjct: 92 LLDNHVPSSQDEEEKCDTDELLNLLDVVYAPNLVNILAFLRNFDQEKHLKEIGLLIIDNL 151
Query: 362 AAPFRV 345
+ P ++
Sbjct: 152 SMPIQL 157
>UniRef50_Q7NHX9 Cluster: DNA repair protein radA; n=23;
Bacteria|Rep: DNA repair protein radA - Gloeobacter
violaceus
Length = 480
Score = 38.3 bits (85), Expect = 0.20
Identities = 38/163 (23%), Positives = 72/163 (44%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDL 543
++ ++ +G ++D +LGGG G++ I G+ G GK+ L+L T+ C + L
Sbjct: 68 QHSRVPSGFGELDRVLGGGVVPGSLVLIGGDPGIGKSTLLLQTA------CRLSQAQTVL 121
Query: 542 FPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSI 363
+ A + +K R + G + +L+ + +L L + V+DSI
Sbjct: 122 YVAA--EESAQQVKLRAERLGVAAPGLFLLAETELE-AVLSELESLKP----GIAVVDSI 174
Query: 362 AAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
A + T ++RE L+ LA++ I + + VT
Sbjct: 175 QAVYLGALTAAAGSVSQVRECTASLMRLAKRTRITLFIVGHVT 217
>UniRef50_Q3ADP9 Cluster: Conserved domain protein; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: Conserved
domain protein - Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008)
Length = 296
Score = 38.3 bits (85), Expect = 0.20
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 603
++ TG D++LGGG +IN I G GSGKT LV
Sbjct: 3 RLVTGIENFDEVLGGGIPLYSINIIAGNPGSGKTILV 39
>UniRef50_A0XYW8 Cluster: DNA repair protein radA; n=9;
Proteobacteria|Rep: DNA repair protein radA -
Alteromonadales bacterium TW-7
Length = 461
Score = 38.3 bits (85), Expect = 0.20
Identities = 36/156 (23%), Positives = 64/156 (41%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKRF 525
T ++D +L GG TG++N I G+ G+GKT L+ + CT + +
Sbjct: 79 TEIGELDRVLSGGVTTGSVNIISGDPGAGKTTLLSDLVARMSKRMPSLYCTAE----ESL 134
Query: 524 NQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRV 345
+Q N + DY N ++ ++ I + L +N + VIDSI A
Sbjct: 135 SQFKNRVNRLKLDY--NADELYLLSETSVETII-----EELDKNKIKFAVIDSIQAVVTD 187
Query: 344 ESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
+ +++ A L +Q ++ + I V
Sbjct: 188 TANGSPGSPSQVKSAAQALTQYCKQNDVTMFIIAHV 223
>UniRef50_O58563 Cluster: Putative uncharacterized protein PH0833;
n=4; Pyrococcus|Rep: Putative uncharacterized protein
PH0833 - Pyrococcus horikoshii
Length = 483
Score = 38.3 bits (85), Expect = 0.20
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHN 582
KI+TG ++D++L GG G+ I G +G+GKT L+ +I N
Sbjct: 267 KITTGIERLDEMLDGGIYKGSSVLIVGMTGTGKTTFSLHFAIAN 310
>UniRef50_O29483 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 253
Score = 38.3 bits (85), Expect = 0.20
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 612
+I +G +D+ILGGGF T+N + G G GKT
Sbjct: 4 RIKSGVIGLDEILGGGFIKNTVNAVVGGMGCGKT 37
>UniRef50_Q4UL56 Cluster: DNA repair protein radA homolog; n=18;
Rickettsiaceae|Rep: DNA repair protein radA homolog -
Rickettsia felis (Rickettsia azadi)
Length = 446
Score = 38.3 bits (85), Expect = 0.20
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Frame = -2
Query: 728 LVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYIC 555
+ + +I T +++ +LGGG G+ I G+ G GK+ L+L + N +YI
Sbjct: 60 VAEQLRIPTPIGELNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYIT 119
Query: 554 TEDLFPAKRFNQI-MNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI 378
E+ +QI + +I+ +Y ++ + +D+ I +N + L+
Sbjct: 120 GEE-----SLDQIKLRAIRLNLTNYNTDILA--ATNLEDIIASIE------ANKNNIDLV 166
Query: 377 VIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
VIDSI E + ++R A L+ A+Q NI I+ VT
Sbjct: 167 VIDSIQTITTKELSSPPGTVSQIRICANELVNYAKQNNIIILLSCHVT 214
>UniRef50_UPI0000585DAC Cluster: PREDICTED: similar to RAD51-like 1
(S. cerevisiae), partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RAD51-like 1 (S.
cerevisiae), partial - Strongylocentrotus purpuratus
Length = 128
Score = 37.9 bits (84), Expect = 0.27
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI 588
+ T + +D +L GG GTI EI G G GKTQ + S+
Sbjct: 82 LPTSLTTLDQLLQGGLLLGTITEIAGPPGCGKTQFCMMLSV 122
>UniRef50_Q3F0X4 Cluster: RecA protein; n=1; Bacillus thuringiensis
serovar israelensis ATCC 35646|Rep: RecA protein -
Bacillus thuringiensis serovar israelensis ATCC 35646
Length = 362
Score = 37.9 bits (84), Expect = 0.27
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 7/164 (4%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKR 528
S+G +D LGGG G I E FG S +GKT L+ K Y+ D+
Sbjct: 33 SSGSLTMDLALGGGVANGRIIEYFGNSMAGKTTLMFLHIAEVQRKNEGYVAFIDM----- 87
Query: 527 FNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA--P 354
MN K Q YG ++ K + + + L++ V LI +DS++A P
Sbjct: 88 -EHAMN--KELAQQYGVDLDKLIYVNPKTAENAVDI-ADSLIRSGEVRLIAVDSVSAMVP 143
Query: 353 FR-VESTDYVQRAGELRELAI----MLITLAQQYNIAIVCINQV 237
+ VES+ Q G L L +A +++ + INQ+
Sbjct: 144 TKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEHDCTVGFINQI 187
>UniRef50_A5HL42 Cluster: DNA primase/helicase; n=1; Phormidium
phage Pf-WMP3|Rep: DNA primase/helicase - Phormidium
phage Pf-WMP3
Length = 682
Score = 37.9 bits (84), Expect = 0.27
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = -2
Query: 743 TCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL---VLYT-SIHNLP 576
T E V TG + ++ +LGGG + + G +G GK+Q V Y + HN
Sbjct: 211 TVNENEVDEVSYDTGFASLNSMLGGGLHVTELCGLVGHTGRGKSQFAAQVAYNLAEHNED 270
Query: 575 KCSVYICTEDLF--PAKRFNQI 516
+YICTE +RF+QI
Sbjct: 271 LKMLYICTEMTHRQMVRRFSQI 292
>UniRef50_Q04761 Cluster: Protein recA; n=310; Bacteria|Rep: Protein
recA - Brucella abortus
Length = 361
Score = 37.9 bits (84), Expect = 0.27
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYT 594
+STG +D LG GG G I EI+G SGKT L L+T
Sbjct: 51 VSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHT 90
>UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79;
Proteobacteria|Rep: DNA repair protein radA -
Bradyrhizobium sp. (strain ORS278)
Length = 499
Score = 37.5 bits (83), Expect = 0.35
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 2/162 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--IHNLPKCSVYICTEDLF 540
++S+G +++D + GGGF G+I + G+ G GK+ L+ + + +VYI E+
Sbjct: 71 RLSSGMTELDRVTGGGFVRGSILLVGGDPGIGKSTLLTQATAMMARAGHRAVYISGEEAV 130
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
R + VE I + L + + LIVIDSI
Sbjct: 131 AQVRLRAERLGLADAPVQLAAETSVEDI-------------ISTLSEGTMPRLIVIDSIQ 177
Query: 359 APFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ ++R A LI A++ AI+ + VT
Sbjct: 178 TMWTDTVESAPGTVTQVRASAQKLIRFAKKSGAAIILVGHVT 219
>UniRef50_Q17EK1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 335
Score = 37.5 bits (83), Expect = 0.35
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Frame = -2
Query: 668 GFRTGTINEIFGESGS--------GKTQLVLYTSIHNLPKCSVYICTEDLFPAKRFNQIM 513
G+ + + IFGE G G+ +L T +LPK ++CTE L RF+Q +
Sbjct: 10 GYNSSELVAIFGEQGLAAEYARKIGRYLYLLVTPADDLPKALCWMCTEQLDSFHRFHQKI 69
Query: 512 NSIKSRDQDYGKNVFVEHISEA 447
N I+ R K+ ++E + EA
Sbjct: 70 NEIQQRTL---KDRYLEFVIEA 88
>UniRef50_O27166 Cluster: Conserved protein; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
Conserved protein - Methanobacterium thermoautotrophicum
Length = 470
Score = 37.5 bits (83), Expect = 0.35
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVYICTEDLF 540
+STG +D++LGGG G+ + G +G+GKT L+ Y S +C ++ E+
Sbjct: 246 VSTGIPTLDEMLGGGVYRGSAVLVSGTTGAGKTSLLSKFAYESCRRGERC-LFFSNEE-- 302
Query: 539 PAKRFNQIMNSI 504
PA + + M SI
Sbjct: 303 PADQIVRNMESI 314
>UniRef50_P0ADK3 Cluster: Uncharacterized protein yiaF; n=26;
Enterobacteriaceae|Rep: Uncharacterized protein yiaF -
Shigella flexneri
Length = 276
Score = 37.5 bits (83), Expect = 0.35
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = -2
Query: 377 VIDSIAAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIHPA 198
V+DS+ A RV DYV ++G LRE+ L LAQQ A + + ++ SD + P
Sbjct: 131 VVDSVNA-IRVPQ-DYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPV 188
Query: 197 LGLAWSNMVST 165
A++ +V+T
Sbjct: 189 FDQAFTKVVTT 199
>UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4;
Deinococci|Rep: DNA repair protein radA - Deinococcus
radiodurans
Length = 503
Score = 37.1 bits (82), Expect = 0.46
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--IHNLPKCSVYICTEDLFPAK 531
+G ++D +LGGG G + I GE G GK+ L+L + + + +Y+ E+
Sbjct: 134 SGIPELDRVLGGGLVAGGVTLIGGEPGIGKSTLLLQVADKVASRGGTVLYVAGEESLEQI 193
Query: 530 RFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPF 351
R + + D ++ EHI+ LL+++ +L ++DSI
Sbjct: 194 RLRADRLGV-AADLQMTRDTRAEHIA--------------ALLEEHKPALCIVDSIQT-V 237
Query: 350 RVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
VE ++R+ ML A++ A V + VT
Sbjct: 238 TVEGEGAPGGVAQVRDGTAMLTRAAKETGTATVLVGHVT 276
>UniRef50_Q5JQE4 Cluster: OSJNBa0096F01.14 protein; n=6; Oryza
sativa|Rep: OSJNBa0096F01.14 protein - Oryza sativa
(Rice)
Length = 501
Score = 37.1 bits (82), Expect = 0.46
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = -2
Query: 728 LVKNCKISTGCSK---IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYI 558
LV+N + + G K + +L T T FG++ G+ Q T++ K S
Sbjct: 158 LVRNIEAAAGGKKPFTLATLLISCTNTFTAKAAFGQACGGELQEQFLTALDEALKFSNGF 217
Query: 557 CTEDLFPAKRFNQIMNSIKSR 495
C DLFP+ RF M ++SR
Sbjct: 218 CFGDLFPSLRFIDAMTGLRSR 238
>UniRef50_A7KV38 Cluster: RecA; n=1; Bacillus phage 0305phi8-36|Rep:
RecA - Bacillus phage 0305phi8-36
Length = 457
Score = 37.1 bits (82), Expect = 0.46
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT 594
+ T +I+ + GGG G I EIFG + SGKT L L T
Sbjct: 57 LPTPSEEINVMTGGGIPRGRITEIFGNNSSGKTSLCLET 95
>UniRef50_Q74ZR1 Cluster: AGR137Wp; n=1; Eremothecium gossypii|Rep:
AGR137Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 503
Score = 37.1 bits (82), Expect = 0.46
Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 1/175 (0%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAK 531
++TG ++DD LG G +I E+FG G GKT L N K + + T P
Sbjct: 18 LTTGIPQLDDALGAGLDPRSIYEVFGPPGIGKTLFGLQVIRCNRGKRVLVVDTHKRTPLD 77
Query: 530 RFNQIMNSIKSRDQDYGK-NVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
R S + + F + + ++L+ + + + L Q ++ + + P
Sbjct: 78 RLLPTEPSADDIEPHVVRLTKFAQLVYFFQELRTAYDLIIIEGLSQVLIDYL-HGRMRHP 136
Query: 353 FRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVTASFADSDSIHPALGL 189
++T + + +L L +L Q++ ++ +N + S HP + +
Sbjct: 137 MPSDTTLHGVKTRQLIALLSLLTRYVTQHHSCVLLLNDAMNTAYQDYSDHPLVAV 191
>UniRef50_Q6CPZ2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome E of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 413
Score = 37.1 bits (82), Expect = 0.46
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--LYTSIHNLPKCSVYICTEDLFP 537
+ +G +DD L GF+ +I E++G G GKT+ L + N KC ++I T P
Sbjct: 18 VRSGIESLDDSLNDGFQPQSIYEVYGPPGIGKTKFAVQLVNNNQNRMKC-LWIDTFQQVP 76
Query: 536 AKRFNQ 519
K Q
Sbjct: 77 LKLIEQ 82
>UniRef50_Q3IN66 Cluster: Probable KaiC-like transcriptional
regulator 1; n=1; Natronomonas pharaonis DSM 2160|Rep:
Probable KaiC-like transcriptional regulator 1 -
Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
Length = 496
Score = 37.1 bits (82), Expect = 0.46
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 597
++TG ++D + GGGF GT I G G GKT + Y
Sbjct: 249 VATGVGELDSLTGGGFEHGTTTFISGPPGVGKTTVGAY 286
>UniRef50_O66827 Cluster: DNA repair protein radA homolog; n=1;
Aquifex aeolicus|Rep: DNA repair protein radA homolog -
Aquifex aeolicus
Length = 444
Score = 37.1 bits (82), Expect = 0.46
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--IHNLPKCSVYICTEDLFPA 534
+TG +D+ LGGG G + I GE G GK+ L+L S + N K +Y+ E+
Sbjct: 67 TTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVANGKKV-LYVSGEE---- 121
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
QI K + + ++ K LQ L++ SL+V+DS+
Sbjct: 122 -SGTQIALRAKRLGINNENLLVYPEVNLEKILQ---------TLEKEKPSLLVLDSVQTI 171
Query: 353 FRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
F ++RE+ + ++ N+ + Q+T
Sbjct: 172 FSERLESSAGSVSQVREVTYRITEFCKEKNVPAFIVGQIT 211
>UniRef50_UPI00015BAB16 Cluster: putative circadian clock protein,
KaiC; n=1; Ignicoccus hospitalis KIN4/I|Rep: putative
circadian clock protein, KaiC - Ignicoccus hospitalis
KIN4/I
Length = 287
Score = 36.7 bits (81), Expect = 0.61
Identities = 43/192 (22%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Frame = -2
Query: 725 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL--PKCSVYICT 552
V ++ TG DD++ GG G + + GE G+GKT ++ + + + +Y+ T
Sbjct: 19 VTKVRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSIHFAWKGVLDGQKVIYVTT 78
Query: 551 ED-----LFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQF-CIRMQLPKLLQQNI 390
E+ + A +F MN K+ ++ K V ++ + K Q+ + + + +LL + I
Sbjct: 79 EESRESIISQAAQFG--MNFNKAIEEK--KMVIIDALLRDKADQWNMVELTVEELLNKII 134
Query: 389 VSLIVIDSIAAPFRVESTD--YVQRAGELRELAIMLITLAQQYNIAIVCINQ--VTASFA 222
+ + A ++S ++ + R+ + ++ + ++N+ IV +Q +T SF
Sbjct: 135 EAKKYLGYGDARVVIDSMSAFWLDKPAMARKYSYLVKRVLNKWNMTIVATSQYAITTSFG 194
Query: 221 DSDSI-HPALGL 189
I H A G+
Sbjct: 195 FGFGIEHVADGI 206
>UniRef50_Q3VLT2 Cluster: Gas vesicle synthesis GvpLGvpF; n=1;
Pelodictyon phaeoclathratiforme BU-1|Rep: Gas vesicle
synthesis GvpLGvpF - Pelodictyon phaeoclathratiforme
BU-1
Length = 249
Score = 36.7 bits (81), Expect = 0.61
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = -2
Query: 551 EDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQ-LPKLLQQNIVSLIV 375
EDLF + + + + Y N +++H+SE K LQ+ ++Q + Q I LIV
Sbjct: 132 EDLFDLPQNVPDILHGNTDSKKYLLNKYIKHLSEEKRLQYIDKIQSIVACNLQKITDLIV 191
Query: 374 ID-SIAAPFRVESTDYVQRA--GELRELAIMLITLAQQYNIAI 255
+ F V++ ++R+ EL +L I + TL ++N+ +
Sbjct: 192 YNKQTTTGFIVDAVFMIERSKKSELLDLVIQMQTLFSEHNVVL 234
>UniRef50_Q0AB05 Cluster: Putative circadian clock protein, KaiC;
n=1; Alkalilimnicola ehrlichei MLHE-1|Rep: Putative
circadian clock protein, KaiC - Alkalilimnicola
ehrlichei (strain MLHE-1)
Length = 492
Score = 36.7 bits (81), Expect = 0.61
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKT---QLVLYTSIHNLPKCSVYICTEDLFP- 537
+G + D++L GG GTI I G SG GK+ ++ + H+ + SV+ E+L
Sbjct: 258 SGNAAFDEMLHGGLENGTITLITGPSGIGKSTVAAMIAAAAAHDGHRASVFQFEEELDGY 317
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAA 357
+R + + Q G + VE I + L L + ++ + ++VIDS+
Sbjct: 318 LRRLRALDVDVDGPLQSRG--LVVEQIEPLRYLADEFMGDLLQRVEDEEIDVVVIDSVTG 375
Query: 356 -PFRVESTDYVQR 321
+ + VQR
Sbjct: 376 FDMALNQDEAVQR 388
>UniRef50_A6G4M7 Cluster: DNA repair protein radA; n=1; Plesiocystis
pacifica SIR-1|Rep: DNA repair protein radA -
Plesiocystis pacifica SIR-1
Length = 473
Score = 36.7 bits (81), Expect = 0.61
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = -2
Query: 737 RELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+E L ++STG +++D +LGGG G++ + G G GK+ L+L
Sbjct: 70 QEQLADAQRLSTGIAELDRVLGGGLVPGSLVLLGGAPGIGKSTLIL 115
>UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1;
Herminiimonas arsenicoxydans|Rep: Putative
uncharacterized protein - Herminiimonas arsenicoxydans
Length = 480
Score = 36.7 bits (81), Expect = 0.61
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
+++TG +DD+LGGG + N + G GSGKT L
Sbjct: 9 RLATGVPGLDDLLGGGLPEFSFNLLAGTPGSGKTTL 44
Score = 33.5 bits (73), Expect = 5.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
++S G +D+++GGG G + G SGSGKT L
Sbjct: 250 RLSMGVPALDEMMGGGLPAGYSLLLVGPSGSGKTVL 285
>UniRef50_Q6FM82 Cluster: Similar to sp|P38953 Saccharomyces
cerevisiae YDR076w RAD55 DNA repair protein; n=1;
Candida glabrata|Rep: Similar to sp|P38953 Saccharomyces
cerevisiae YDR076w RAD55 DNA repair protein - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 337
Score = 36.7 bits (81), Expect = 0.61
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 734 ELLVKNCK-ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT 594
+L+V K ISTG + +D+ L GGFR + EI+G G GKT L T
Sbjct: 9 QLIVNAPKPISTGLTALDNELDGGFRYKSSYEIYGIPGIGKTWLASET 56
>UniRef50_Q0W053 Cluster: Putative ATPase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Putative ATPase -
Uncultured methanogenic archaeon RC-I
Length = 254
Score = 36.7 bits (81), Expect = 0.61
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICT-EDL 543
++ TG +D +L GGF G+ I G GSGKT L L + + + +Y+ T E +
Sbjct: 12 QVKTGVDGLDILLSGGFVKGSTILISGSYGSGKTLLALQYAFYQAQRGDKVLYVSTSEPV 71
Query: 542 FPAKRF 525
F ++F
Sbjct: 72 FKIRQF 77
>UniRef50_P65954 Cluster: DNA repair protein radA homolog; n=43;
Actinobacteria (class)|Rep: DNA repair protein radA
homolog - Mycobacterium bovis
Length = 480
Score = 36.7 bits (81), Expect = 0.61
Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 2/159 (1%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--NLPKCSVYICTEDLFPAK 531
TG ++D +LGGG G++ + G+ G GK+ L+L + + ++Y+ E
Sbjct: 72 TGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGE------ 125
Query: 530 RFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPF 351
+ I+ R G VE I A + + +Q +L+++DS+
Sbjct: 126 ---ESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQP---ALVIVDSVQTMS 179
Query: 350 RVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
E+ ++R + L A+ +A++ + VT
Sbjct: 180 TSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVT 218
>UniRef50_P74646 Cluster: Circadian clock protein kinase kaiC; n=89;
Bacteria|Rep: Circadian clock protein kinase kaiC -
Synechocystis sp. (strain PCC 6803)
Length = 519
Score = 36.7 bits (81), Expect = 0.61
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2
Query: 719 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 603
N +IS+G +D++ GGGF +I G +G+GKT LV
Sbjct: 261 NARISSGVQTLDEMCGGGFFKDSIILATGATGTGKTLLV 299
Score = 34.3 bits (75), Expect = 3.3
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVYICTED 546
KI T D+I GG G + G SG+GKT L LY IH+ ++I E+
Sbjct: 21 KIRTVIEGFDEITHGGLPIGRTTLVSGTSGTGKTLLAVQFLYQGIHHFDYPGLFITFEE 79
>UniRef50_A5FSU6 Cluster: DNA repair protein RadA; n=5;
Chloroflexi|Rep: DNA repair protein RadA -
Dehalococcoides sp. BAV1
Length = 464
Score = 36.3 bits (80), Expect = 0.81
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 2/160 (1%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY--TSIHNLPKCSVYICTEDLFPA 534
S S+ + +LGGG G++ + GE G GK+ L+L S+ VY+ E+ PA
Sbjct: 70 SLSISEFNRVLGGGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEE-NPA 128
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAP 354
+ IK R Q G + + DL I QL L SL+VIDSI
Sbjct: 129 Q--------IKMRAQRLGISGEGLFLMAETDLN-AILAQLSVLCP----SLVVIDSIQTV 175
Query: 353 FRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
F E ++RE A+ L+ A+ ++ VT
Sbjct: 176 FLPELEAAPGAINQVRESALRLMQWAKSSGASVFITAHVT 215
>UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Rep:
ORF021 - Staphylococcus phage G1
Length = 418
Score = 36.3 bits (80), Expect = 0.81
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 725 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS 591
+KN I T + D ILGGG G + E++G +GSGK+ ++ S
Sbjct: 37 IKNV-IPTMVPQYDYILGGGIPLGRLTEVYGLTGSGKSTFAVHLS 80
>UniRef50_Q8ZT96 Cluster: Putative uncharacterized protein PAE3364;
n=5; Thermoproteaceae|Rep: Putative uncharacterized
protein PAE3364 - Pyrobaculum aerophilum
Length = 281
Score = 36.3 bits (80), Expect = 0.81
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKT 612
TG ID +L GGFR G I + GE+G GKT
Sbjct: 24 TGIWYIDQLLQGGFRKGEIYLVAGEAGQGKT 54
>UniRef50_O29893 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 238
Score = 36.3 bits (80), Expect = 0.81
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -2
Query: 701 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 597
G S++D++LGGG T N I G SG GKT L +
Sbjct: 8 GISRLDELLGGGLDRYTENLIIGRSGIGKTILAAH 42
>UniRef50_A7IAV9 Cluster: HTR-like protein; n=1; Candidatus
Methanoregula boonei 6A8|Rep: HTR-like protein -
Methanoregula boonei (strain 6A8)
Length = 275
Score = 36.3 bits (80), Expect = 0.81
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 534
++ TG + +D IL GG GT+ +FG+ G+G + +++++L + L+P
Sbjct: 8 RMPTGIASLDPILDGGVPPGTLTLLFGDIGAGHYEFAYSSTVNSLAEMHRVPGAGILYPK 67
Query: 533 K 531
K
Sbjct: 68 K 68
>UniRef50_A7D6B3 Cluster: KaiC domain protein; n=6; cellular
organisms|Rep: KaiC domain protein - Halorubrum
lacusprofundi ATCC 49239
Length = 499
Score = 36.3 bits (80), Expect = 0.81
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
+IS+G + D++L GG GT+ + G +G GKT L
Sbjct: 244 QISSGIPEFDELLHGGIERGTVTVVSGPTGVGKTTL 279
>UniRef50_Q39199 Cluster: DNA repair protein recA homolog 1,
chloroplast precursor; n=155; cellular organisms|Rep:
DNA repair protein recA homolog 1, chloroplast precursor
- Arabidopsis thaliana (Mouse-ear cress)
Length = 439
Score = 36.3 bits (80), Expect = 0.81
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 597
S+G +D LGGG G + EI+G SGKT L L+
Sbjct: 118 SSGILTLDLALGGGLPKGRVVEIYGPESSGKTTLALH 154
>UniRef50_Q17VK6 Cluster: Putative uncharacterized protein Hac
prophage II orf8; n=1; Helicobacter acinonychis str.
Sheeba|Rep: Putative uncharacterized protein Hac
prophage II orf8 - Helicobacter acinonychis (strain
Sheeba)
Length = 383
Score = 35.9 bits (79), Expect = 1.1
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSV-YICTEDLFP 537
KI TG +DD+ GGF G + + G+ +GKT L + + + V Y E F
Sbjct: 149 KIPTGLRFLDDLTEGGFEVGQMVLLSGDPEAGKTLLGVQVLVQAMQTSKVTYFGFE--FS 206
Query: 536 AKRFNQIMNSIKSRDQDYGKNVFVEHIS-EAKDLQFCIR 423
++ + + K Q +G+N F++ S E DL IR
Sbjct: 207 VRKHMETLK--KQGFQIHGRNYFIDDQSYEMNDLIAQIR 243
>UniRef50_A4M8G8 Cluster: AAA ATPase; n=1; Petrotoga mobilis
SJ95|Rep: AAA ATPase - Petrotoga mobilis SJ95
Length = 423
Score = 35.9 bits (79), Expect = 1.1
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--LYTSIHNLPKCSVYICTEDLF 540
KI T +ID++L GG G + + G+ G GK+ L+ + SI Y+ E+
Sbjct: 40 KIPTNFQEIDNVLNGGLVEGAVYLLSGDPGIGKSTLLAQIAKSIQTAEGYIFYVSGEE-- 97
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
++ Q N ++ ++++ G +F ++ I L K ++ S+I IDS+
Sbjct: 98 STEQVVQRFNRLEIKNKNIGL-IFENNVD-------VILNALEKSNMKS--SVIFIDSVQ 147
Query: 359 APFRVESTDYVQRA-GELRELAIMLITLAQQYNIAIVCINQV 237
+++S D + ++RE ++ A++ NI +V + V
Sbjct: 148 T-LKIDSIDSSPGSILQVRESTRKMVEYAKKKNIPVVLVGHV 188
>UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage
Ma-LMM01|Rep: RecA recombinase - Cyanophage Ma-LMM01
Length = 354
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 603
I +G +D +LGGG+ G I EI GE+ GKT L+
Sbjct: 43 IPSGIFSLDYVLGGGWPVGKIVEIAGETSVGKTTLM 78
>UniRef50_Q7R451 Cluster: GLP_254_31158_29860; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_254_31158_29860 - Giardia lamblia
ATCC 50803
Length = 432
Score = 35.9 bits (79), Expect = 1.1
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -2
Query: 731 LLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 597
L + N K S D +L R I EI GESG+GKT+++LY
Sbjct: 79 LFIPNFKHLKTMSPFDLVLANVIREQHITEIAGESGTGKTRILLY 123
>UniRef50_P43705 Cluster: Protein recA; n=176; root|Rep: Protein
recA - Haemophilus influenzae
Length = 354
Score = 35.9 bits (79), Expect = 1.1
Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVL 600
ISTG +D LG GG G I EIFG SGKT L L
Sbjct: 41 ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTL 78
>UniRef50_Q48N05 Cluster: Circadian oscillation regulator KaiC
homolog; n=12; Proteobacteria|Rep: Circadian oscillation
regulator KaiC homolog - Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6)
Length = 515
Score = 35.5 bits (78), Expect = 1.4
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVYICTEDLF 540
+ +G ++DD+L GG GT + G +GSGKT + L + KC++Y E +
Sbjct: 267 VPSGVKELDDLLVGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDERIA 326
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSI 363
M SR G+ + ++ I A+ ++ +++ ++IV+DS+
Sbjct: 327 TLISRADSMGMELSRHVSSGQ-LIIQQIDPAEISPGEFAWRVRTEVEERGSTMIVVDSL 384
>UniRef50_A6W1I1 Cluster: DNA repair protein RadA; n=66;
Proteobacteria|Rep: DNA repair protein RadA -
Marinomonas sp. MWYL1
Length = 462
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT 594
+ S+G ++ D +LGGG G + I G G+GK+ L+L T
Sbjct: 78 RFSSGANEFDRVLGGGLVPGGVVLIGGHPGAGKSTLLLQT 117
>UniRef50_A6NUV1 Cluster: DNA repair protein radA; n=1; Bacteroides
capillosus ATCC 29799|Rep: DNA repair protein radA -
Bacteroides capillosus ATCC 29799
Length = 460
Score = 35.5 bits (78), Expect = 1.4
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLF 540
+ TG S++D +LGGG G++ + G G GK+ L+L NL + + +Y+ E+
Sbjct: 77 RFETGMSELDRVLGGGAVKGSLVLVGGAPGIGKSTLMLQI-CDNLCRFAKVLYVSGEE-- 133
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
++R ++ R G+ +++ + D+ + P +L ++DSI
Sbjct: 134 -SERQIKLR---AERLHVNGEGLYLLSETNLDDIVEAVNELQPDIL--------IVDSIQ 181
Query: 359 APFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
+ E T G++++ + L+ LA+ I + I V
Sbjct: 182 TLYNGELTTAPGSVGQVKDCTMTLMQLAKGQGITVFVIGHV 222
>UniRef50_A5NQF2 Cluster: KaiC domain protein; n=1; Methylobacterium
sp. 4-46|Rep: KaiC domain protein - Methylobacterium sp.
4-46
Length = 501
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
++ TG + +D+ILGGG G + + G GSGKT L
Sbjct: 19 RVPTGIAGLDEILGGGLFEGGVYIVQGTPGSGKTIL 54
>UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3;
Cyanobacteria|Rep: DNA repair protein radA - Lyngbya sp.
PCC 8106
Length = 564
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
++S+G ++D +LGGG G++ I GE G GK+ L+L
Sbjct: 86 RMSSGYGELDRVLGGGIVPGSLVLIGGEPGIGKSTLLL 123
>UniRef50_A7L3L0 Cluster: Replicative DNA helicase; n=1;
Enterococcus phage F4|Rep: Replicative DNA helicase -
Enterococcus phage F4
Length = 311
Score = 35.5 bits (78), Expect = 1.4
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = -2
Query: 689 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI 588
+ +++GGG+++G + IFG SG GK+ ++L ++
Sbjct: 128 LTELIGGGYQSGNLYTIFGRSGRGKSTVMLVEAL 161
>UniRef50_A7TGZ2 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 422
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
I +G ++D+ L GF++ +I EI+G G GKT+L L
Sbjct: 18 IKSGIEELDECLEDGFQSRSIYEIYGPPGIGKTRLGL 54
>UniRef50_Q8ZYK9 Cluster: Putative uncharacterized protein PAE0729;
n=5; Thermoproteaceae|Rep: Putative uncharacterized
protein PAE0729 - Pyrobaculum aerophilum
Length = 258
Score = 35.5 bits (78), Expect = 1.4
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKC---SVYICTEDLF 540
+ TG +D I+GGGF G I GE+G+ KT L I K +YI ++ +
Sbjct: 11 VPTGIEGLDTIIGGGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVDETY 70
Query: 539 P-----AKRFNQIMNSIKSR 495
A+RF + +++R
Sbjct: 71 EQFVEGARRFGWDIEDLRAR 90
>UniRef50_Q3IML2 Cluster: Probable KaiC-like transcriptional
regulator 3; n=3; Halobacteriaceae|Rep: Probable
KaiC-like transcriptional regulator 3 - Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678)
Length = 231
Score = 35.5 bits (78), Expect = 1.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 612
++S+G + DD++ GGF G + + G GSGKT
Sbjct: 2 RVSSGVAGFDDLVAGGFPVGRLYVLSGPPGSGKT 35
>UniRef50_P53756 Cluster: Probable ATP-dependent transporter YNR070W;
n=7; Saccharomycetaceae|Rep: Probable ATP-dependent
transporter YNR070W - Saccharomyces cerevisiae (Baker's
yeast)
Length = 1333
Score = 35.5 bits (78), Expect = 1.4
Identities = 26/100 (26%), Positives = 48/100 (48%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKR 528
S+G K+ D + G GT+ + GESG+GKT L+ + N+ + + + L
Sbjct: 741 SSGQRKLLDSVSGYCVPGTLTALIGESGAGKTTLLNTLAQRNVGTITGDMLVDGLPMDAS 800
Query: 527 FNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPK 408
F + ++ +D + V ++ + LQF RM+ P+
Sbjct: 801 FKRRTGYVQQQD------LHVAELTVKESLQFSARMRRPQ 834
>UniRef50_UPI000038E425 Cluster: hypothetical protein Faci_03001859;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001859 - Ferroplasma acidarmanus fer1
Length = 380
Score = 35.1 bits (77), Expect = 1.9
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
+ S G KID + GG R G + I G++GSGKT L
Sbjct: 114 RYSFGIHKIDMAISGGLRPGFVYLISGKTGSGKTTL 149
>UniRef50_Q7D3Y2 Cluster: AGR_pAT_129p; n=4; Rhizobiaceae|Rep:
AGR_pAT_129p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 504
Score = 35.1 bits (77), Expect = 1.9
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 606
I +G +++D++ GGG GT + G++G+GK+ +
Sbjct: 277 IKSGVAELDEMFGGGQEAGTTTLVIGQAGTGKSTM 311
>UniRef50_Q1IJA5 Cluster: Protein recA; n=1; Acidobacteria bacterium
Ellin345|Rep: Protein recA - Acidobacteria bacterium
(strain Ellin345)
Length = 252
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 707 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+TG + +D + GGG G + E+FG SG+T + L
Sbjct: 35 TTGIAALDRLTGGGLPVGAVCELFGPECSGRTSVAL 70
>UniRef50_A7HJZ5 Cluster: DNA repair protein RadA; n=2;
Thermotogaceae|Rep: DNA repair protein RadA -
Fervidobacterium nodosum Rt17-B1
Length = 465
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 728 LVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
L++ +I TG + ID++L GG G + + GE G GK+ + L
Sbjct: 70 LLEEERIKTGINSIDELLSGGLIKGQVILLGGEPGVGKSTIAL 112
>UniRef50_Q2USE9 Cluster: Predicted protein; n=6;
Trichocomaceae|Rep: Predicted protein - Aspergillus
oryzae
Length = 375
Score = 35.1 bits (77), Expect = 1.9
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Frame = -2
Query: 683 DILGGGFRTGTINEIFGESGSGKTQLVL---YTSIHNLPKCSVYICTEDLFPAKRFNQIM 513
DI G G + E++G G+GKT L L +++ N K ++I T P R ++
Sbjct: 62 DINSNGIPCGHVTEVYGPPGAGKTSLALSVATSALRNGDKV-IWIDTGSPLPKVRLASML 120
Query: 512 N---SIKSRD--QDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPF 351
S D +D KN+ H L + ++ PK L+VIDS++ F
Sbjct: 121 KKSPDATSSDLPEDPIKNLIYFHARSLPHL-LALLIRPPKGFPPEDAKLLVIDSVSGLF 178
>UniRef50_Q9UXG4 Cluster: Putative uncharacterized protein
ORF-c40_013; n=2; Sulfolobus|Rep: Putative
uncharacterized protein ORF-c40_013 - Sulfolobus
solfataricus
Length = 175
Score = 35.1 bits (77), Expect = 1.9
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 1/147 (0%)
Frame = -2
Query: 665 FRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTE-DLFPAKRFNQIMNSIKSRDQ 489
F G + I+GESG GKT L L ++ + SV+I TE LF A+ + IK
Sbjct: 8 FERGNLVSIYGESGVGKTSLSLELALE--IRTSVFISTEGSLFEAR-----LEKIK---- 56
Query: 488 DYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIAAPFRVESTDYVQRAGEL 309
G+ V+ + +L I L + SLIV+D+I +R Y +
Sbjct: 57 -VGQGVYFASVKSNIELFNGIINSL-----EYKPSLIVVDTINTFYR-----YERNVHSF 105
Query: 308 RELAIMLITLAQQYNIAIVCINQVTAS 228
+L I+L ++AQ N+ I+ + +V+A+
Sbjct: 106 LKLLIILRSIAQS-NVKILLVWEVSAN 131
>UniRef50_Q8RY99 Cluster: DNA repair protein recA homolog 2,
mitochondrial precursor; n=1; Arabidopsis thaliana|Rep:
DNA repair protein recA homolog 2, mitochondrial
precursor - Arabidopsis thaliana (Mouse-ear cress)
Length = 389
Score = 35.1 bits (77), Expect = 1.9
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLY 597
ISTG +D LG GG G + E++G+ SGKT L L+
Sbjct: 97 ISTGSLNLDLALGVGGLPKGRMVEVYGKEASGKTTLALH 135
>UniRef50_P74391 Cluster: DNA repair protein radA homolog; n=8;
Cyanobacteria|Rep: DNA repair protein radA homolog -
Synechocystis sp. (strain PCC 6803)
Length = 505
Score = 35.1 bits (77), Expect = 1.9
Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Frame = -2
Query: 704 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH---NLPKCSVYICTEDLFPA 534
+G ++D +LGGG G + I G+ G GK+ L+L + LP+ +Y+ E+
Sbjct: 84 SGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQVAFQLATRLPRI-LYVSAEESGQQ 142
Query: 533 KRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIV---SLIVIDSI 363
+ I + + +++ +L L +L++ + +IDSI
Sbjct: 143 IKLRATRLGITQTVEPSQAQDGINNLAHDGNLFVLPETNLDDILRELEALQPQVAIIDSI 202
Query: 362 AAPFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
+ + ++RE +L+ LA++ +I++ + VT
Sbjct: 203 QNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHISLFIVGHVT 245
>UniRef50_P73860 Cluster: KaiC-like protein 1; n=17; cellular
organisms|Rep: KaiC-like protein 1 - Synechocystis sp.
(strain PCC 6803)
Length = 568
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -2
Query: 713 KISTGCSKIDDILGG-GFRTGTINEIFGESGSGKTQLVLY 597
+ISTG ++DD+ GG G+ G+ + G +G+GKT L +
Sbjct: 252 RISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAF 291
>UniRef50_Q5PBN4 Cluster: DNA repair protein radA; n=7;
Anaplasmataceae|Rep: DNA repair protein radA - Anaplasma
marginale (strain St. Maries)
Length = 456
Score = 34.7 bits (76), Expect = 2.5
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 2/162 (1%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL--YTSIHNLPKCSVYICTEDLF 540
++ G ++D +LGGG G+ I GE G GK+ L+L + S+ +Y+ E+
Sbjct: 73 RLCVGNDELDRVLGGGIVAGSSILIGGEPGIGKSTLMLQVFASLAGQSHSCLYVSGEESV 132
Query: 539 PAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIVIDSIA 360
R ++ + K V +S L N + +VIDSI
Sbjct: 133 AQIRARATRLNV---SEPQIKLVATSSLSSV----------LNAACADNF-AFLVIDSIQ 178
Query: 359 APFRVESTDYVQRAGELRELAIMLITLAQQYNIAIVCINQVT 234
E ++R A LI LA+Q NI + + Q+T
Sbjct: 179 TMHDEEIPSSPGTVLQVRMCAHKLIMLAKQRNIGLFLLGQIT 220
>UniRef50_Q4LDC0 Cluster: Protein recA; n=4; cellular organisms|Rep:
Protein recA - Lactobacillus casei
Length = 158
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLY 597
IS+G ID++LG GG G I E++G SG+T + L+
Sbjct: 5 ISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGETTVALH 43
>UniRef50_Q1CXY6 Cluster: Putative uncharacterized protein; n=2;
Cystobacterineae|Rep: Putative uncharacterized protein -
Myxococcus xanthus (strain DK 1622)
Length = 500
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHN 582
+ISTG +D +L GGFR + G GSGKT H+
Sbjct: 11 RISTGIPGLDTVLHGGFRKARTYMLMGLPGSGKTIFANQVCFHH 54
>UniRef50_A5IP72 Cluster: ABC transporter related; n=7;
Staphylococcus aureus|Rep: ABC transporter related -
Staphylococcus aureus subsp. aureus JH9
Length = 240
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 665 FRTGTINEIFGESGSGKTQLV-LYTSIHNLPKCSVYICTEDLF 540
FR+G+IN I G +G+GKT L+ + +SI K VY+ +E +F
Sbjct: 25 FRSGSINCIVGVNGAGKTTLLNIISSILMPTKGDVYLNSESIF 67
>UniRef50_A3ZNU6 Cluster: RecA protein; n=1; Blastopirellula marina
DSM 3645|Rep: RecA protein - Blastopirellula marina DSM
3645
Length = 392
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 710 ISTGCSKIDDILGG-GFRTGTINEIFGESGSGKTQLVLY 597
I TG +D LGG G G + EIFG SGKT L L+
Sbjct: 77 IPTGSISLDLALGGKGLPRGRVIEIFGPESSGKTTLALH 115
>UniRef50_Q4CZQ5 Cluster: DNA repair protein, putative; n=2;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 393
Score = 34.7 bits (76), Expect = 2.5
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 707 STGCSKIDDIL-GGGFRTGTINEIFGESGSGKTQLV 603
STG + ID +L GG GT+ EIFG +GK+ LV
Sbjct: 44 STGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLV 79
>UniRef50_A3LR58 Cluster: ATP-dependent ABC transporter; n=4;
Saccharomycetales|Rep: ATP-dependent ABC transporter -
Pichia stipitis (Yeast)
Length = 1271
Score = 34.7 bits (76), Expect = 2.5
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -2
Query: 683 DILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVY 561
D + F +N I G SGSGKT L+ Y S + LPK + Y
Sbjct: 710 DNVSASFAASEVNVIMGPSGSGKTTLLNYLS-NRLPKSTSY 749
>UniRef50_Q4JB87 Cluster: Conserved protein; n=7; Thermoprotei|Rep:
Conserved protein - Sulfolobus acidocaldarius
Length = 261
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTED 546
++STG + D ++ GG G + GE G+GKT L+ L + + VY+ TE+
Sbjct: 3 RLSTGIYEFDKLIEGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEE 60
>UniRef50_Q1DEE6 Cluster: Putative uncharacterized protein; n=1;
Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
protein - Myxococcus xanthus (strain DK 1622)
Length = 491
Score = 34.3 bits (75), Expect = 3.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 722 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 612
++ ++STG +D +LGGG + + GE G+GKT
Sbjct: 10 QDARVSTGVPGLDAVLGGGLVSSGVYIFVGEPGAGKT 46
>UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
RecA-superfamily ATPase implicated in signal
transduction-like protein - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 214
Score = 34.3 bits (75), Expect = 3.3
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 725 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
VK K G +D++L GG GTI I G +G+GKT L
Sbjct: 136 VKAEKKGFGIRDLDEMLNGGLPEGTITIISGGTGTGKTTFAL 177
>UniRef50_A4VM13 Cluster: RecA-superfamily ATPase implicated in
signal transduction; n=1; Pseudomonas stutzeri
A1501|Rep: RecA-superfamily ATPase implicated in signal
transduction - Pseudomonas stutzeri (strain A1501)
Length = 470
Score = 34.3 bits (75), Expect = 3.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+ TG +D+ LGGGF + + G SG+GKT L
Sbjct: 242 LPTGIGGLDEALGGGFIERSATLVIGPSGAGKTTFAL 278
>UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 -
Burkholderia phytofirmans PsJN
Length = 531
Score = 34.3 bits (75), Expect = 3.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL 579
+ TG +D+ILGGG G + + G +G+GKT L H +
Sbjct: 54 VETGVPGLDEILGGGLVRGGVYLLEGMAGAGKTILSSQIGFHRV 97
Score = 34.3 bits (75), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 689 IDDILGGGFRTGTINEIFGESGSGKTQLVL 600
+D +LGGGF G+ + G SG GKT L L
Sbjct: 295 LDGLLGGGFAQGSTTTLVGPSGVGKTLLCL 324
>UniRef50_Q389E0 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 379
Score = 34.3 bits (75), Expect = 3.3
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 707 STGCSKIDDIL-GGGFRTGTINEIFGESGSGKTQLV 603
STG ++D +L GG GT+ E+FG GK++LV
Sbjct: 34 STGSEELDRLLPDGGMTCGTVLEVFGPPSGGKSRLV 69
>UniRef50_Q0W7M9 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 279
Score = 34.3 bits (75), Expect = 3.3
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK 573
K+ TG + D ++ GGF G+ + GE G+G + V Y+S L K
Sbjct: 7 KVPTGITSFDPVIKGGFPAGSFVLLLGEVGAGSQEFV-YSSALMLSK 52
>UniRef50_Q8EVC7 Cluster: Protein recA; n=2; Mycoplasma|Rep: Protein
recA - Mycoplasma penetrans
Length = 329
Score = 34.3 bits (75), Expect = 3.3
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Frame = -2
Query: 719 NCKISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYICTE 549
N I +G +D+ +G GG+ G I EI+G SGKT + L + + YI E
Sbjct: 34 NQVIKSGSILLDNAIGVGGYPKGKIIEIYGNESSGKTTIALQCVKECIKEGGSVAYIDAE 93
Query: 548 DLFPAKRFNQI---MNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI 378
+K + + + +YG+ F I +A L++ N+V LI
Sbjct: 94 CSIDSKYLSHLGIDPTKLLVATPEYGEQAF--SIIDA-------------LIKTNMVDLI 138
Query: 377 VIDSIAA 357
V+DS+AA
Sbjct: 139 VVDSVAA 145
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,280,915
Number of Sequences: 1657284
Number of extensions: 12754826
Number of successful extensions: 39268
Number of sequences better than 10.0: 295
Number of HSP's better than 10.0 without gapping: 37203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39108
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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