Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J02
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           26   0.28 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   2.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.5  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   6.0  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 399 TKYCFSHCN*FYRCSI*SGEY*LCAESWRTPRTSHYADHLSPAV*YSYCLHKSSY 235
           T++ ++H N  Y        Y  C  S   P  +H+ + ++P V + +  H S Y
Sbjct: 35  TEHNYTHNNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVTPMVNHDFTQHLSQY 89


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 335 DYVQRAGELRELAIMLITLAQQYNIAIVCINQV 237
           DY +R G  +EL++ LIT      +A+V  ++V
Sbjct: 145 DYFERLGANQELSLELITRKLATLMALVTAHRV 177


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 632 ESGSGKTQLVLYTSIHNL 579
           ++GSGKT   +   IHNL
Sbjct: 203 QTGSGKTAAFMLPIIHNL 220


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 473 HFYHSLDLCSLLNSLFD*IF*LETNPQCKCIQNI 574
           HF+ +L L S L S F  I  L    QC  +Q I
Sbjct: 90  HFFGTLKLWSQLFSTFAGIEVLHVVKQCYHLQKI 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,466
Number of Sequences: 336
Number of extensions: 3693
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)