Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_J02
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 78 2e-15
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 67 2e-12
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 61 1e-10
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 39 9e-04
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 27 3.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 5.0
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 5.0
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 8.8
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 8.8
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 8.8
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 77.8 bits (183), Expect = 2e-15
Identities = 73/256 (28%), Positives = 117/256 (45%), Gaps = 54/256 (21%)
Frame = -2
Query: 740 CRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ--------LVLYTSIH 585
C V + ++TG K+D+ L GG G + EI GESGSGK+Q + L S+
Sbjct: 65 CSASKVTSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLG 124
Query: 584 NLPKCSVYICTEDLFPAKRFNQIMNSIKSR----------DQDYGKNVFVEHISEAKDLQ 435
+ K +V+I TE KR ++ + R ++ G V+ + + +
Sbjct: 125 GMNKAAVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQE 184
Query: 434 FCIRMQLPKLLQQNIVSLIVIDSIAAPFRVE------------STDYVQRAGELRELAIM 291
I+ QLP L ++ + L+++DS+A+ +R E + +R +L +LA+
Sbjct: 185 HIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGKLAMT 244
Query: 290 LITLAQQYNIAIVCINQVTASF-ADSDSIH-----------------------PALGLAW 183
L TLA Q+ A+V NQV+ D D+I P+LGL W
Sbjct: 245 LRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLVW 304
Query: 182 SNMVSTRLRISKTTQS 135
+N +STRL + K T S
Sbjct: 305 TNNISTRLALIKKTDS 320
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 67.3 bits (157), Expect = 2e-12
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 12/182 (6%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------KCSVYI 558
I+TG ++D +L GG TG+I E+FGE +GK+Q+ ++ LP KC +YI
Sbjct: 124 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKC-LYI 182
Query: 557 CTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLI 378
TE F R + + ++ NV A D Q + Q ++ ++ SL+
Sbjct: 183 DTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNA-DHQLELLQQAANMMSESRFSLL 241
Query: 377 VIDSIAAPFRVESTDYVQRAGELRELAIMLIT---LAQQYNIAIVCINQVTASFADSDSI 207
V+DS A +R + + + + LA + T LA ++ IA+V NQV A D S
Sbjct: 242 VVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQ-VDGISF 300
Query: 206 HP 201
+P
Sbjct: 301 NP 302
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 61.3 bits (142), Expect = 1e-10
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 17/205 (8%)
Frame = -2
Query: 710 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKCS-------VYIC 555
ISTG ++ ILGGG ++ +I E+FGE GKTQ+ + LP+ +I
Sbjct: 95 ISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMGGAEGKVAFID 154
Query: 554 TEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSLIV 375
TE F R I +N+ V ++ I + L++
Sbjct: 155 TEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYITKLGTIFAEDGQYRLLI 214
Query: 374 IDSIAAPFRVESTDYVQRAGELRELAIMLITL---AQQYNIAIVCINQVTAS------FA 222
+DSI A FRV+ + + + ++L IML L ++++N+A+ NQV A FA
Sbjct: 215 VDSIMALFRVDYSGRGELSERQQKLNIMLARLNHISEEFNVAVFVTNQVQADPGAAMMFA 274
Query: 221 DSDSIHPALGLAWSNMVSTRLRISK 147
+D P G ++ +TRL + K
Sbjct: 275 SNDR-KPVGGHVMAHASATRLLLRK 298
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 38.7 bits (86), Expect = 9e-04
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Frame = -2
Query: 689 IDDILGG-GFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLFPAKRFNQ 519
+DD GG G + G I+E+ G G GKT L L + + L S +++ T P +R Q
Sbjct: 32 LDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLSGSRVIWVETCQPIPMERLRQ 91
Query: 518 IMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNI--------VSLIVIDSI 363
++++ QD + + + D+ + + +N + L++ID++
Sbjct: 92 LLDNHVPSSQDEEEKCDTDELLNLLDVVYAPNLVNILAFLRNFDQEKHLKEIGLLIIDNL 151
Query: 362 AAPFRV 345
+ P ++
Sbjct: 152 SMPIQL 157
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 689 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS 567
I+ +L G GT+ I G S SGKT+L+ + + + L + S
Sbjct: 31 IEKVLYSGSVNGTLLVIEGNSCSGKTELLYHLASNVLLRSS 71
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 19 NXVEEFAKSGAKTTEISLANNLF*PPESLLQTPLSSIITDWVVLLILNLVETIL 180
N V++ + GA T+ +S++ PP +PL+ ++ VV L ++ V +L
Sbjct: 399 NSVKKMNEDGADTSLLSVSEVTSHPPTEWTGSPLAHVLCSDVVNLSVSTVFNLL 452
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 653 TINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKRFNQIMNSIKSRDQ 489
++ IF E GKT L T + + K Y D++ I+N +K +D+
Sbjct: 379 SLKNIFEEDNLGKTSLKCVTILSRMFKQRNYDVLPDVYDLFLSVNILNDMKIKDE 433
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 680 ILGGGFRTGTINEIFGESGSGKT 612
I GGF I + GE+G+GKT
Sbjct: 367 IKSGGFSDAEIIVLLGENGTGKT 389
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 306 SEFSSSLHIVSTLHSKWSSDRINYNERNNILL 401
S S S+H ST HS +S N + RNN+ +
Sbjct: 457 SSNSFSVHRSSTNHSSTNSGSPNLSRRNNLAI 488
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -2
Query: 275 QQYNIAIVCINQVTASFADSDSIHPALGLAWSNMVSTRLRISKTTQSVIIDDSGVCKSD 99
+ Y+ AI +NQ + ++H A+ L + + L I+ +S+ I + + SD
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,143
Number of Sequences: 5004
Number of extensions: 58053
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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