Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J02
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical ...    73   2e-13
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    73   2e-13
AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short i...    73   2e-13
AB011382-1|BAA24982.1|  357|Caenorhabditis elegans RecA/Rad51/Dm...    73   2e-13
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6b protein.
          Length = 357

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
 Frame = -2

Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLP--------KCSVY 561
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL    ++   LP        KC +Y
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKC-MY 175

Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
           I T   F  +R   I            +N+ V     ++ L   I ++   ++ ++  ++
Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALI-IRAGAMMSESRYAV 234

Query: 380 IVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVT------AS 228
           +++D   A FR E T   D  +R  +L      L  LA +Y +A++  NQV       AS
Sbjct: 235 VIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGAS 294

Query: 227 FADSDSIHPALGLAWSNMVSTRLRISK 147
              +D+  P  G   ++M +TRL + K
Sbjct: 295 MFQADAKKPIGGHIIAHMSTTRLYLRK 321


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
 Frame = -2

Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLP--------KCSVY 561
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL    ++   LP        KC +Y
Sbjct: 155 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKC-MY 213

Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
           I T   F  +R   I            +N+ V     ++ L   I ++   ++ ++  ++
Sbjct: 214 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALI-IRAGAMMSESRYAV 272

Query: 380 IVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVT------AS 228
           +++D   A FR E T   D  +R  +L      L  LA +Y +A++  NQV       AS
Sbjct: 273 VIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGAS 332

Query: 227 FADSDSIHPALGLAWSNMVSTRLRISK 147
              +D+  P  G   ++M +TRL + K
Sbjct: 333 MFQADAKKPIGGHIIAHMSTTRLYLRK 359


>AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short
           isoform protein.
          Length = 357

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
 Frame = -2

Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLP--------KCSVY 561
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL    ++   LP        KC +Y
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKC-MY 175

Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
           I T   F  +R   I            +N+ V     ++ L   I ++   ++ ++  ++
Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALI-IRAGAMMSESRYAV 234

Query: 380 IVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVT------AS 228
           +++D   A FR E T   D  +R  +L      L  LA +Y +A++  NQV       AS
Sbjct: 235 VIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGAS 294

Query: 227 FADSDSIHPALGLAWSNMVSTRLRISK 147
              +D+  P  G   ++M +TRL + K
Sbjct: 295 MFQADAKKPIGGHIIAHMSTTRLYLRK 321


>AB011382-1|BAA24982.1|  357|Caenorhabditis elegans
           RecA/Rad51/Dmc1-like protein protein.
          Length = 357

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
 Frame = -2

Query: 713 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLP--------KCSVY 561
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL    ++   LP        KC +Y
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKC-MY 175

Query: 560 ICTEDLFPAKRFNQIMNSIKSRDQDYGKNVFVEHISEAKDLQFCIRMQLPKLLQQNIVSL 381
           I T   F  +R   I            +N+ V     ++ L   I ++   ++ ++  ++
Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALI-IRAGAMMSESRYAV 234

Query: 380 IVIDSIAAPFRVEST---DYVQRAGELRELAIMLITLAQQYNIAIVCINQVT------AS 228
           +++D   A FR E T   D  +R  +L      L  LA +Y +A++  NQV       AS
Sbjct: 235 VIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGAS 294

Query: 227 FADSDSIHPALGLAWSNMVSTRLRISK 147
              +D+  P  G   ++M +TRL + K
Sbjct: 295 MFQADAKKPIGGHIIAHMSTTRLYLRK 321


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 605 LVEFFLNHFHQISH*LFPYETHHLIYHLF*NSPYLFYNF 721
           L  FFL H       +FP +  H +++ F  + Y+ YNF
Sbjct: 78  LSNFFLTHNEHNMEVIFPVKVFHFLHYYFAYAQYI-YNF 115


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 605 LVEFFLNHFHQISH*LFPYETHHLIYHLF*NSPYLFYNF 721
           L  FFL H       +FP +  H +++ F  + Y+ YNF
Sbjct: 78  LSNFFLTHNEHNMEVIFPVKVFHFLHYYFAYAQYI-YNF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,435
Number of Sequences: 27780
Number of extensions: 323886
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)