Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_J02
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    24   1.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   1.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   1.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.4  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 306 SEFSSSLHIVSTLHSKWSSDR 368
           +EFSSSLH+  T    W  +R
Sbjct: 40  AEFSSSLHLTETQVKIWFQNR 60


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 309 EFSSSLHIVSTLHSKWSSDRINYNERNN 392
           E S    I+S+L + + S+  NYN  NN
Sbjct: 74  ERSKERKIISSLSNNYISNISNYNNNNN 101


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 309 EFSSSLHIVSTLHSKWSSDRINYNERNN 392
           E S    I+S+L + + S+  NYN  NN
Sbjct: 312 ERSKERKIISSLSNNYISNISNYNNNNN 339


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 652 VPVRNPPPNISSILEQPVLILQFFT 726
           VPV     N+ SI E+P ++L+ +T
Sbjct: 6   VPVLLVTANVGSIFEEPSVMLKIWT 30


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 312


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 312


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 312


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 312


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 312


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 312


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 352 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 380


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 QTPLSSIITDWVVLLILNLVETILDQARP 195
           +TP   ++  W+ +L L  +  +L  +RP
Sbjct: 352 RTPDRYVMPSWIKMLFLQWLPCLLRMSRP 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,211
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)