Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I21
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 42 3e-04
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 37 0.010
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 35 0.040
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 33 0.21
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 4.5
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 4.5
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 4.5
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 6.0
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 6.0
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 6.0
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 6.0
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 27 7.9
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/129 (25%), Positives = 57/129 (44%)
Frame = -1
Query: 609 YFNXYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVE 430
YF+ AK F++ SD+ E L++ RGG++ + D E
Sbjct: 36 YFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQDIQKPEND-------E 88
Query: 429 VGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSL 250
G + A AL +K E + +H ++D A +T +IEE+++ +Q +I
Sbjct: 89 WGTALKAFEAALALEKFNNESLLKLHSTAGNHND----AHLTDFIEEKYLDEQVKSINEF 144
Query: 249 AGHTSDLKR 223
A ++LKR
Sbjct: 145 ARMVANLKR 153
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 37.1 bits (82), Expect = 0.010
Identities = 29/117 (24%), Positives = 55/117 (47%)
Frame = -1
Query: 573 AKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKAL 394
AK F++ SD+ L++ RGG++ + K +K E G + A AL
Sbjct: 48 AKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNIQKPEKD-----EWGTVLEAFEAAL 100
Query: 393 DTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 223
++ + +H + +D A +T YI+E+++ +Q +I A H +++KR
Sbjct: 101 ALERANNASLLKLHGIAEQRND----AHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 351 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 196
+ V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 32.7 bits (71), Expect = 0.21
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = -1
Query: 486 DFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEI 307
D S+HTT S TVE H++ ++A ++ T + E + FI + + + L+ A
Sbjct: 627 DSSAHTT----PISTRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALK 682
Query: 306 TQYIEEEFVSQQ-ADTIRSLAGHTSDLKRFITENNG 202
T + E S++ A+ IRS + + +++ +G
Sbjct: 683 TGWAAMEQASKKDAEVIRSHVDKLASIAEQLSKRHG 718
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 348 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 199
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 348 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 199
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 297 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 178
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 297 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 178
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.0
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 374 PRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 198
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 197 TCLSP 183
LSP
Sbjct: 257 RSLSP 261
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.0
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 374 PRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 198
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 197 TCLSP 183
LSP
Sbjct: 257 RSLSP 261
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.0
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 374 PRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 198
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 197 TCLSP 183
LSP
Sbjct: 257 RSLSP 261
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -1
Query: 510 VTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNS 331
+T+ G D S L D+G + VG ++ ALA +K + + I RE +
Sbjct: 4372 ITREDGGDDNKSPDELIDDRGRSTGSAVGDKLAALAAFNAARKNAEDALLDITREDGGDD 4431
Query: 330 DLLHDAEITQYI-EEEFVSQQADTI 259
+ D I +EE V++ DT+
Sbjct: 4432 NKSPDELIDDLAKKEETVAKLLDTV 4456
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -2
Query: 374 PRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSS 225
PRG + + SL T S S++T V P VAS TP TSS
Sbjct: 103 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,577,763
Number of Sequences: 27780
Number of extensions: 230875
Number of successful extensions: 741
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -