Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I20
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 150 4e-37
07_03_0361 + 17215312-17216217 29 1.8
08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713... 28 3.1
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 28 3.1
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 27 4.1
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 4.1
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099 27 5.4
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 7.1
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 7.1
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 27 7.1
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 150 bits (363), Expect = 4e-37
Identities = 64/100 (64%), Positives = 82/100 (82%)
Frame = -3
Query: 353 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 174
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 173 MFQLPKLYAKLHYCVXCAXHSKVXRNRSKKDRRIRTPPKR 54
+ LPKLYAK+H+CV CA H+ + R RS+++RR R PP+R
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPER 100
>07_03_0361 + 17215312-17216217
Length = 301
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -3
Query: 374 TGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI 195
+G+E T K++ GG G G + V+ + +A K+ ++ +VE AA +
Sbjct: 51 SGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VVEFAASHSV 105
Query: 194 NDASVYP-MFQLPKLYAKLHYCVXCAXHSKVXRNRSKKD 81
N + +YP M +L + + + + S R +++
Sbjct: 106 NSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRRE 144
>08_02_0660 -
19768165-19769394,19770500-19770752,19771307-19771372,
19771524-19771588,19773265-19773343,19773920-19774293
Length = 688
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 75 NPDAAQEELPEGHGNG 28
NP+AA E LPEG G+G
Sbjct: 300 NPEAAAEPLPEGPGSG 315
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -3
Query: 161 PKLYAKLHYCVXCAXHSKVXRNRSKKDRRIRTPPKRNXPRDMATANKAVQRK 6
PK Y ++ + + K+ ++ + + PKRN + TAN A + K
Sbjct: 990 PKRYRRIVEKIIESSKKKIEEQEDAEENQNKARPKRNNNEEKQTANSATKGK 1041
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 198 ISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRS 371
+S+ R NH D+ H P A+C HS ++ + LG+ +T ++L+S
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 186 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 338
GI + D +YD + LF+ L+ P A +SH+F+ V T + S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491
>08_02_0661 -
19780036-19781002,19781244-19781298,19782760-19783099
Length = 453
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 75 NPDAAQEELPEGHGNG 28
NPDAA E PEG G+G
Sbjct: 13 NPDAAAERPPEGPGSG 28
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 350 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 201
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 204 DRRRFYDVPNHELFD 248
DR FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3
Query: 309 TSMLGASSITALTSHVSNLRSGEQ 380
+SML +S+++++S +SNLRS +Q
Sbjct: 164 SSMLRRASVSSISSFLSNLRSHDQ 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,306,933
Number of Sequences: 37544
Number of extensions: 159527
Number of successful extensions: 494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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