Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I19
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 28 1.4
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 28 1.8
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 27 4.2
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 27 4.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.2
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 27 4.2
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 26 5.5
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 7.3
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 7.3
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 25 9.7
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 9.7
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 9.7
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 516 KQLVKLVDV--TAEDLKYLIEYLYTGYLKN--IENADFVNLLMIADRYNL 379
K LV ++V E L Y + L G LK+ +ENA FV L AD Y+L
Sbjct: 29 KALVNTLNVYKLEERLNYYNDRLLDGNLKSKELENATFVTLARNADLYDL 78
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 456 DILSSISNLLQSRLQVLPTASDSQLSLP*TSL*IHHYVQPEWLYAL 593
D + S+LL + +L T S S LS T + +Y++P+WLY L
Sbjct: 26 DNIQVSSSLLSFLIYILYTFSISGLS---TFVITKYYIRPQWLYTL 68
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 669 HTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETIESQKQLVK 502
HT + + LE+ ++ + ++ + +A D+FKA F+E T + K V+
Sbjct: 532 HTADSIRTELEECNYQYKVQYNDRVLTADSYIAEGLDIFKAAFKEFTQKFGKSEVR 587
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -3
Query: 663 FEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFRE-ETIESQKQL-VKLVD 493
F LLK+L ++ +++ +D + +HK +L + + M R +I+ +K + ++L+D
Sbjct: 91 FRNLLKSLSKSNVSVLPDDSDATHLHKWLLKFQNMLTLLMSRAFHSIQDEKNINIELLD 149
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 4.2
Identities = 26/117 (22%), Positives = 53/117 (45%)
Frame = -3
Query: 780 FSNLDVGFMXNKSLYIAIAFPSPKILNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGE 601
F+ L+ F+ +KS I P+P L L + + + +++ ED D + + E
Sbjct: 89 FTQLEALFIPSKS----IKAPTPSRL-LREIAAVSQKGSQQIIIRPFEDVDIKNILKAIE 143
Query: 600 KFRVHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTAEDLKYLIEYLYTGYLKNI 430
R ++ + + T+ES++QL K+++ A+D + + + T K I
Sbjct: 144 DSRYPFVANKLNASTIEVKPQRTTLESRQQLAKVLEGYAKDSREQLSAMRTELKKEI 200
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 163 NKVSEKFSY*FCISDVFEGVYF*SVFVLFN 252
N++++K+S ++F G+YF F+L N
Sbjct: 54 NQIADKYSRKITREEIFSGIYFLRYFLLRN 83
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 473 FKSSAVTSTSFTNCF*LSIVSSLNIALNTSLCAARMALCTLNFSPSSDTKVKSASSKFLS 652
F S+A TSTS + S+VSS + ++S + + + PS+ + S SS S
Sbjct: 197 FSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSS 256
Query: 653 NPS 661
+ S
Sbjct: 257 SSS 259
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 414 VNLLMIADRYNLKGLRHLSQCALAEQLTIENAFYILAMA 298
V LL +ADRY L G L A A ++ +L A
Sbjct: 191 VRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQA 229
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 611 SDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGLGNAMAMYRDL 748
S+ K +A + PSKV VN+LS F N +MYR +
Sbjct: 364 SERKAYAADDSIDNTPSKVPIVNSLSDPRTNRPFFYSNPDSMYRSI 409
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -3
Query: 300 ADMYDSNYLKAESLK--FIKKNKDTLKVNTFKDITNAELVREL 178
+++ + + L ESLK F+K+N++ +K+NT I E E+
Sbjct: 8 SNINNEDKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEI 50
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 487 SHVYKFYQLLLTLNCLFPEHRFEYITMCSQNGFM 588
S VY F + +FP+H++ + + Q G++
Sbjct: 593 SEVYDFVEAADGFGEVFPQHKYAVVDILQQRGYL 626
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 312 YRMHFLLSAVQQVHTEKDVLSLLDCICQLSLAG*QSRHFLYFLGNQYIDILSSISN 479
Y + L H D++SLL + LA S Y G Q +IL ++SN
Sbjct: 29 YAIDSLALIADSFHMLNDIVSLLVALWATRLAHSTSHEPKYTYGWQRAEILGALSN 84
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 591 VHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTAE----DLKYLIEYLYTGYLKNIEN 424
V ++++HS +K +FR +I QL K V E +L+ + + Y +++ EN
Sbjct: 2 VETDLMSSHSSNWKEIFRTHSIAQTIQLEKFVSQQIEEKGRELQQNVCFNYQSFIEASEN 61
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 705 LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMF 541
L L +K++ VH F + + F+ V + EKF K LAA + +++F
Sbjct: 996 LQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIF 1050
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,172
Number of Sequences: 5004
Number of extensions: 60039
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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