Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I19
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          49   6e-08
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      44   2e-06
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.83 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 48.8 bits (111), Expect = 6e-08
 Identities = 29/98 (29%), Positives = 50/98 (51%)
 Frame = -3

Query: 663 FEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTA 484
           F  LL+     D TL   +    + HK +L+A S  F+ +      +    ++   DV  
Sbjct: 26  FHQLLQTEAFVDVTLACNEAS-LKAHKVVLSACSSYFQKLLLSNPCK-HPTIIMPQDVCF 83

Query: 483 EDLKYLIEYLYTGYLKNIENADFVNLLMIADRYNLKGL 370
            DLK++IE++Y G + ++  A+  +LL  AD+  +KGL
Sbjct: 84  NDLKFIIEFVYRGEI-DVSQAELQSLLKTADQLKIKGL 120


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 30/112 (26%), Positives = 53/112 (47%)
 Frame = -3

Query: 705 LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETI 526
           L  N +   +T   FE L  + +  D TL   DG   + H+ +L+A S  F+ + +  + 
Sbjct: 9   LRWNNYQSSIT-SAFENLRDDEDFVDVTLAC-DGRSLKAHRVVLSACSPYFRELLK--ST 64

Query: 525 ESQKQLVKLVDVTAEDLKYLIEYLYTGYLKNIENADFVNLLMIADRYNLKGL 370
             +  ++ L DV   DL  L+E++Y G + N+      + L  A+   + GL
Sbjct: 65  PCKHPVIVLQDVAFSDLHALVEFIYHGEV-NVHQRSLSSFLKTAEVLRVSGL 115


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 707 IFGLGNAMAMYRDLFXMNPTSRLEKXYVLTYSKQP 811
           I  LGN +    DL   NPT +  K Y  TY+  P
Sbjct: 332 IHTLGNTLVFLFDLIGRNPTVQ-NKLYEETYALAP 365


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 575 RMALCTLNFSPSSDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGL 718
           RM  C L+  P      +S  SKF +   ++  ++ +     F+ F L
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNL 432


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 575 RMALCTLNFSPSSDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGL 718
           RM  C L+  P      +S  SKF +   ++  ++ +     F+ F L
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNL 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,991
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)