Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.2  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   9.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 120  HIGLG*FLNAIYQNKREGKGKAGVKSKHESISLY 221
            H G   FLNAIY   R G  KA  K  H +  +Y
Sbjct: 1228 HYGHPDFLNAIYMTTRGGVSKA-QKGLHVNEDIY 1260


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -2

Query: 454 EEIRNKNYISILTIKKKYIYLNSLFYVMLNLMKDESASR*FLIINAMVMFYRSLLNDMRS 275
           EE  +  Y S L       Y+NS   ++  + +   A   F     +V  YR+LLN M+S
Sbjct: 91  EESEDDGYPSGLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSGGLVAEYRTLLNSMQS 150


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 217 CTHFNLKCVHFFDNKFYFLDC 279
           C  F   CV F ++KF+FL+C
Sbjct: 127 CMWFK-NCVGFRNHKFFFLEC 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,676
Number of Sequences: 5004
Number of extensions: 41382
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)