Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I18
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-5|AAG23983.1|  378|Caenorhabditis elegans Serpentine rece...    28   5.0  
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    28   6.7  

>U80028-5|AAG23983.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein129 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 185 WCEIKTRIYKFVHILI*NVYIFSITNFIFLTAHVI 289
           WC+    + +FV +++   Y  S+ + +  T H+I
Sbjct: 22  WCKFLLNLEEFVSVIMHQEYTISVASLVINTFHII 56


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 223 HFNLKCVHFFDNKFYFLDCACHSTMNGK 306
           HFN K V F +N F  + C     ++GK
Sbjct: 51  HFNSKIVLFTNNTFVLIHCLARIVLHGK 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,209,140
Number of Sequences: 27780
Number of extensions: 226070
Number of successful extensions: 318
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)