Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I17
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    31   0.23 
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    28   1.2  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.8  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = +3

Query: 306 WYSCWNDRH---FS*QDSSFSADPSWGPTVWMIYLAGKL*PPVTL---ASPVGHPPIESH 467
           W + W++R+   F   +S   A P W   V  + +     PP ++   A P G PP  S+
Sbjct: 13  WVAQWDERYKCYFYVNESDPKAKPQWECPVRGLTIP----PPPSVDHSAPPSGPPPSYSN 68

Query: 468 SACKKGPAARC-MAPSTPPPAFS 533
           SA    PAA    A   P PA S
Sbjct: 69  SAAPATPAASASSAAPAPAPAAS 91


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 453 PIESHSACKKGPAARCMAPSTPPPAFSLELA-AFTIASISSLVMSPLKIETRSXMDL 620
           P ES ++   G     + PS+PPP FS E A A     I  L    L +E     DL
Sbjct: 16  PFESENS-SLGATPLSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALDVEDEEGEDL 71


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 260  FSESSRSTHSATYS*EVSRN*YRNEQNYILHVLTYRCGDLRDVD 129
            FS+  RS  S T S     N YRN Q   LH   Y C  L  ++
Sbjct: 928  FSKDYRSLLSITQSCNTLSNFYRNAQEKSLH--AYLCQLLHSIN 969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,235
Number of Sequences: 5004
Number of extensions: 60073
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)